Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MIR663B-201ENST00000408361 115 ntBASIC14.28□□□□□ -0.12
COL8A1P27658 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 FAM21FP-201ENST00000426241 1131 ntBASIC14.28□□□□□ -0.12
COL8A1P27658 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.28□□□□□ -0.12
COL8A1P27658 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
COL8A1P27658 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC14.28□□□□□ -0.12
COL8A1P27658 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
COL8A1P27658 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC14.28□□□□□ -0.12
COL8A1P27658 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.28□□□□□ -0.12
COL8A1P27658 MPDU1-223ENST00000582151 728 ntBASIC14.28□□□□□ -0.12
COL8A1P27658 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 CYP2A7P1-201ENST00000595391 815 ntBASIC14.28□□□□□ -0.12
COL8A1P27658 AC233724.13-201ENST00000598383 410 ntBASIC14.28□□□□□ -0.12
COL8A1P27658 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.28□□□□□ -0.12
COL8A1P27658 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
COL8A1P27658 RPSAP52-203ENST00000622976 1023 ntBASIC14.28□□□□□ -0.12
COL8A1P27658 AC073439.1-201ENST00000624121 1774 ntBASIC14.28□□□□□ -0.12
COL8A1P27658 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC14.28□□□□□ -0.12
COL8A1P27658 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
COL8A1P27658 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
COL8A1P27658 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC14.27□□□□□ -0.12
COL8A1P27658 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL8A1P27658 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL8A1P27658 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC14.27□□□□□ -0.12
COL8A1P27658 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL8A1P27658 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL8A1P27658 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.27□□□□□ -0.12
COL8A1P27658 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL8A1P27658 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
COL8A1P27658 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
COL8A1P27658 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC14.27□□□□□ -0.13
COL8A1P27658 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC14.27□□□□□ -0.13
COL8A1P27658 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
COL8A1P27658 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC14.27□□□□□ -0.13
COL8A1P27658 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
COL8A1P27658 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC14.27□□□□□ -0.13
COL8A1P27658 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.27□□□□□ -0.13
COL8A1P27658 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC14.27□□□□□ -0.13
COL8A1P27658 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC14.27□□□□□ -0.13
COL8A1P27658 PFN1P12-201ENST00000455938 534 ntBASIC14.27□□□□□ -0.13
COL8A1P27658 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC14.27□□□□□ -0.13
COL8A1P27658 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC14.27□□□□□ -0.13
COL8A1P27658 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC14.27□□□□□ -0.13
COL8A1P27658 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC14.27□□□□□ -0.13
COL8A1P27658 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.27□□□□□ -0.13
COL8A1P27658 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC14.27□□□□□ -0.13
COL8A1P27658 AL033527.5-202ENST00000641632 1098 ntBASIC14.27□□□□□ -0.13
COL8A1P27658 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 FAM20A-205ENST00000592554 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC14.27□□□□□ -0.13
COL8A1P27658 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
COL8A1P27658 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC14.27□□□□□ -0.13
COL8A1P27658 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC14.27□□□□□ -0.13
COL8A1P27658 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
COL8A1P27658 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC14.27□□□□□ -0.13
COL8A1P27658 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.27□□□□□ -0.13
COL8A1P27658 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL8A1P27658 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC14.26□□□□□ -0.13
COL8A1P27658 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.26□□□□□ -0.13
COL8A1P27658 KRT18P55-202ENST00000578578 1546 ntBASIC14.26□□□□□ -0.13
COL8A1P27658 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL8A1P27658 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC14.26□□□□□ -0.13
COL8A1P27658 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
COL8A1P27658 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL8A1P27658 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
COL8A1P27658 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC14.26□□□□□ -0.13
COL8A1P27658 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
COL8A1P27658 LYSMD4-203ENST00000378904 2122 ntBASIC14.26□□□□□ -0.13
COL8A1P27658 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC14.26□□□□□ -0.13
COL8A1P27658 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC14.26□□□□□ -0.13
COL8A1P27658 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC14.26□□□□□ -0.13
COL8A1P27658 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL8A1P27658 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC14.26□□□□□ -0.13
COL8A1P27658 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
COL8A1P27658 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
COL8A1P27658 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
COL8A1P27658 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.26□□□□□ -0.13
COL8A1P27658 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
COL8A1P27658 IGHJ2P-201ENST00000454480 60 ntBASIC14.26□□□□□ -0.13
COL8A1P27658 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.26□□□□□ -0.13
COL8A1P27658 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC14.26□□□□□ -0.13
COL8A1P27658 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC14.26□□□□□ -0.13
COL8A1P27658 SDHAP3-202ENST00000515467 728 ntBASIC14.26□□□□□ -0.13
COL8A1P27658 RNA5SP412-201ENST00000516234 123 ntBASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms