Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC15.48■□□□□ 0.07
COL5A1P20908 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
COL5A1P20908 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.47■□□□□ 0.07
COL5A1P20908 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC15.47■□□□□ 0.07
COL5A1P20908 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.47■□□□□ 0.07
COL5A1P20908 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
COL5A1P20908 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC15.47■□□□□ 0.07
COL5A1P20908 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC15.47■□□□□ 0.07
COL5A1P20908 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.47■□□□□ 0.07
COL5A1P20908 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.47■□□□□ 0.07
COL5A1P20908 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.47■□□□□ 0.07
COL5A1P20908 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.47■□□□□ 0.07
COL5A1P20908 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
COL5A1P20908 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 KRT8P44-201ENST00000441609 1350 ntBASIC15.47■□□□□ 0.07
COL5A1P20908 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.47■□□□□ 0.07
COL5A1P20908 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 RNF216P1-203ENST00000404404 2427 ntBASIC15.47■□□□□ 0.07
COL5A1P20908 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.47■□□□□ 0.07
COL5A1P20908 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC15.47■□□□□ 0.07
COL5A1P20908 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.47■□□□□ 0.07
COL5A1P20908 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.47■□□□□ 0.07
COL5A1P20908 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC15.47■□□□□ 0.07
COL5A1P20908 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.47■□□□□ 0.07
COL5A1P20908 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC15.47■□□□□ 0.07
COL5A1P20908 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
COL5A1P20908 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
COL5A1P20908 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.46■□□□□ 0.07
COL5A1P20908 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 AC006538.1-201ENST00000567905 1585 ntBASIC15.46■□□□□ 0.07
COL5A1P20908 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC15.46■□□□□ 0.07
COL5A1P20908 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.07
COL5A1P20908 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 SOCS2P1-201ENST00000417727 557 ntBASIC15.46■□□□□ 0.07
COL5A1P20908 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC15.46■□□□□ 0.07
COL5A1P20908 USB1-202ENST00000423271 1217 ntTSL 2 BASIC15.46■□□□□ 0.07
COL5A1P20908 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 RPL13P2-201ENST00000440687 659 ntBASIC15.46■□□□□ 0.07
COL5A1P20908 RPL7P3-201ENST00000441388 714 ntBASIC15.46■□□□□ 0.07
COL5A1P20908 KLF2P4-201ENST00000451959 1225 ntBASIC15.46■□□□□ 0.07
COL5A1P20908 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.46■□□□□ 0.07
COL5A1P20908 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
COL5A1P20908 BTNL10-201ENST00000595971 695 ntBASIC15.46■□□□□ 0.07
COL5A1P20908 MIR6787-201ENST00000616675 61 ntBASIC15.46■□□□□ 0.07
COL5A1P20908 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
COL5A1P20908 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
COL5A1P20908 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
COL5A1P20908 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC15.46■□□□□ 0.07
COL5A1P20908 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.46■□□□□ 0.06
COL5A1P20908 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
COL5A1P20908 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
COL5A1P20908 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
COL5A1P20908 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
COL5A1P20908 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
COL5A1P20908 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
COL5A1P20908 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC15.45■□□□□ 0.06
COL5A1P20908 ACTG1P3-201ENST00000431775 1114 ntBASIC15.45■□□□□ 0.06
COL5A1P20908 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.45■□□□□ 0.06
COL5A1P20908 FO681548.1-201ENST00000455617 1132 ntBASIC15.45■□□□□ 0.06
COL5A1P20908 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
COL5A1P20908 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
COL5A1P20908 PTP4A1P2-201ENST00000546033 454 ntBASIC15.45■□□□□ 0.06
COL5A1P20908 AC068587.10-201ENST00000641210 219 ntBASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms