Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM1P09493 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TPM1P09493 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TPM1P09493 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM1P09493 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC18.16■□□□□ 0.5
TPM1P09493 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
TPM1P09493 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM1P09493 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM1P09493 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
TPM1P09493 RCN1P1-201ENST00000400413 996 ntBASIC18.16■□□□□ 0.5
TPM1P09493 AP000867.3-201ENST00000524675 377 ntBASIC18.16■□□□□ 0.5
TPM1P09493 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
TPM1P09493 AC091167.2-201ENST00000579581 588 ntBASIC18.16■□□□□ 0.5
TPM1P09493 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.16■□□□□ 0.5
TPM1P09493 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC18.16■□□□□ 0.5
TPM1P09493 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM1P09493 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM1P09493 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM1P09493 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM1P09493 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
TPM1P09493 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM1P09493 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
TPM1P09493 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC18.16■□□□□ 0.5
TPM1P09493 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC18.15■□□□□ 0.5
TPM1P09493 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC18.15■□□□□ 0.5
TPM1P09493 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC18.15■□□□□ 0.5
TPM1P09493 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC18.15■□□□□ 0.5
TPM1P09493 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.15■□□□□ 0.5
TPM1P09493 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TPM1P09493 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 WDR53-204ENST00000433160 887 ntTSL 5 BASIC18.15■□□□□ 0.5
TPM1P09493 AP002383.4-201ENST00000442518 975 ntBASIC18.15■□□□□ 0.5
TPM1P09493 FAM86EP-206ENST00000510506 987 ntBASIC18.15■□□□□ 0.5
TPM1P09493 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC18.15■□□□□ 0.5
TPM1P09493 MIR5100-201ENST00000579544 119 ntBASIC18.15■□□□□ 0.5
TPM1P09493 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TPM1P09493 AC099336.1-202ENST00000602961 463 ntBASIC18.15■□□□□ 0.5
TPM1P09493 AL022326.1-202ENST00000641533 845 ntBASIC18.15■□□□□ 0.5
TPM1P09493 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TPM1P09493 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
TPM1P09493 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
TPM1P09493 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
TPM1P09493 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC18.14■□□□□ 0.5
TPM1P09493 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
TPM1P09493 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TPM1P09493 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TPM1P09493 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
TPM1P09493 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
TPM1P09493 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC18.14■□□□□ 0.49
TPM1P09493 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 NUS1P2-201ENST00000417358 873 ntBASIC18.14■□□□□ 0.49
TPM1P09493 BX005266.1-201ENST00000473402 457 ntBASIC18.14■□□□□ 0.49
TPM1P09493 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC18.14■□□□□ 0.49
TPM1P09493 AC012615.1-201ENST00000565797 1299 ntBASIC18.14■□□□□ 0.49
TPM1P09493 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.14■□□□□ 0.49
TPM1P09493 MIR4492-201ENST00000581627 80 ntBASIC18.14■□□□□ 0.49
TPM1P09493 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.14■□□□□ 0.49
TPM1P09493 AL591684.3-201ENST00000605187 298 ntBASIC18.14■□□□□ 0.49
TPM1P09493 AC116407.4-201ENST00000623319 1061 ntBASIC18.14■□□□□ 0.49
TPM1P09493 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TPM1P09493 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC18.14■□□□□ 0.49
TPM1P09493 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TPM1P09493 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.14■□□□□ 0.49
TPM1P09493 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TPM1P09493 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
TPM1P09493 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 GPAA1P2-202ENST00000606848 1787 ntBASIC18.14■□□□□ 0.49
TPM1P09493 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.14■□□□□ 0.49
TPM1P09493 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TPM1P09493 SUPT20HL2-201ENST00000486479 2409 ntBASIC18.13■□□□□ 0.49
TPM1P09493 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TPM1P09493 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms