Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC16.06■□□□□ 0.16
SIX3O95343 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.06■□□□□ 0.16
SIX3O95343 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.06■□□□□ 0.16
SIX3O95343 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC16.06■□□□□ 0.16
SIX3O95343 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SIX3O95343 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.06■□□□□ 0.16
SIX3O95343 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SIX3O95343 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.06■□□□□ 0.16
SIX3O95343 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SIX3O95343 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.06■□□□□ 0.16
SIX3O95343 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.06■□□□□ 0.16
SIX3O95343 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
SIX3O95343 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SIX3O95343 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC16.06■□□□□ 0.16
SIX3O95343 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.06■□□□□ 0.16
SIX3O95343 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX3O95343 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX3O95343 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SIX3O95343 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
SIX3O95343 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SIX3O95343 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SIX3O95343 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.05■□□□□ 0.16
SIX3O95343 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
SIX3O95343 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.05■□□□□ 0.16
SIX3O95343 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SIX3O95343 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SIX3O95343 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
SIX3O95343 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.05■□□□□ 0.16
SIX3O95343 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC16.05■□□□□ 0.16
SIX3O95343 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
SIX3O95343 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.05■□□□□ 0.16
SIX3O95343 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.05■□□□□ 0.16
SIX3O95343 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.05■□□□□ 0.16
SIX3O95343 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX3O95343 DDT-204ENST00000404092 805 ntTSL 3 BASIC16.05■□□□□ 0.16
SIX3O95343 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.05■□□□□ 0.16
SIX3O95343 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SIX3O95343 RNA5SP415-201ENST00000517246 115 ntBASIC16.05■□□□□ 0.16
SIX3O95343 AL031432.2-201ENST00000566714 459 ntBASIC16.05■□□□□ 0.16
SIX3O95343 AL928711.1-201ENST00000570165 459 ntBASIC16.05■□□□□ 0.16
SIX3O95343 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC16.05■□□□□ 0.16
SIX3O95343 LITAF-211ENST00000572255 516 ntTSL 4 BASIC16.05■□□□□ 0.16
SIX3O95343 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
SIX3O95343 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.05■□□□□ 0.16
SIX3O95343 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.05■□□□□ 0.16
SIX3O95343 AC021097.1-201ENST00000607902 574 ntBASIC16.05■□□□□ 0.16
SIX3O95343 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX3O95343 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SIX3O95343 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SIX3O95343 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.05■□□□□ 0.16
SIX3O95343 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.05■□□□□ 0.16
SIX3O95343 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.05■□□□□ 0.16
SIX3O95343 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
SIX3O95343 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX3O95343 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX3O95343 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX3O95343 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.05■□□□□ 0.16
SIX3O95343 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX3O95343 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SIX3O95343 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SIX3O95343 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SIX3O95343 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.04■□□□□ 0.16
SIX3O95343 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
SIX3O95343 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
SIX3O95343 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.04■□□□□ 0.16
SIX3O95343 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.04■□□□□ 0.16
SIX3O95343 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.04■□□□□ 0.16
SIX3O95343 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.04■□□□□ 0.16
SIX3O95343 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SIX3O95343 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 HCG4B-203ENST00000450128 991 ntBASIC16.04■□□□□ 0.16
SIX3O95343 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC16.04■□□□□ 0.16
SIX3O95343 AL645728.2-201ENST00000641974 660 ntBASIC16.04■□□□□ 0.16
SIX3O95343 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.04■□□□□ 0.16
SIX3O95343 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
SIX3O95343 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
SIX3O95343 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
SIX3O95343 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
SIX3O95343 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.04■□□□□ 0.16
SIX3O95343 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
SIX3O95343 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.03■□□□□ 0.16
SIX3O95343 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms