Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.76■□□□□ 0.11
SEMA3DO95025 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.76■□□□□ 0.11
SEMA3DO95025 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
SEMA3DO95025 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC15.76■□□□□ 0.11
SEMA3DO95025 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
SEMA3DO95025 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
SEMA3DO95025 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
SEMA3DO95025 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.76■□□□□ 0.11
SEMA3DO95025 AC026396.1-201ENST00000419388 421 ntBASIC15.76■□□□□ 0.11
SEMA3DO95025 AC007967.2-201ENST00000432613 625 ntBASIC15.76■□□□□ 0.11
SEMA3DO95025 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.76■□□□□ 0.11
SEMA3DO95025 MAL2-202ENST00000531508 892 ntTSL 3 BASIC15.76■□□□□ 0.11
SEMA3DO95025 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
SEMA3DO95025 AC027601.4-201ENST00000611259 610 ntBASIC15.76■□□□□ 0.11
SEMA3DO95025 AC120114.3-201ENST00000611923 658 ntBASIC15.76■□□□□ 0.11
SEMA3DO95025 CAND2-206ENST00000626378 333 ntTSL 5 BASIC15.76■□□□□ 0.11
SEMA3DO95025 BANP-204ENST00000393208 2283 ntTSL 2 BASIC15.76■□□□□ 0.11
SEMA3DO95025 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
SEMA3DO95025 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.76■□□□□ 0.11
SEMA3DO95025 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.76■□□□□ 0.11
SEMA3DO95025 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
SEMA3DO95025 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.76■□□□□ 0.11
SEMA3DO95025 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC15.76■□□□□ 0.11
SEMA3DO95025 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
SEMA3DO95025 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.76■□□□□ 0.11
SEMA3DO95025 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.76■□□□□ 0.11
SEMA3DO95025 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.76■□□□□ 0.11
SEMA3DO95025 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
SEMA3DO95025 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
SEMA3DO95025 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 AC092364.2-201ENST00000596710 2692 ntBASIC15.75■□□□□ 0.11
SEMA3DO95025 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.75■□□□□ 0.11
SEMA3DO95025 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
SEMA3DO95025 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC15.75■□□□□ 0.11
SEMA3DO95025 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
SEMA3DO95025 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
SEMA3DO95025 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.75■□□□□ 0.11
SEMA3DO95025 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC15.75■□□□□ 0.11
SEMA3DO95025 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC15.75■□□□□ 0.11
SEMA3DO95025 KRT18P2-201ENST00000447938 1258 ntBASIC15.75■□□□□ 0.11
SEMA3DO95025 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.75■□□□□ 0.11
SEMA3DO95025 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.75■□□□□ 0.11
SEMA3DO95025 RNA5SP416-201ENST00000516838 111 ntBASIC15.75■□□□□ 0.11
SEMA3DO95025 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.75■□□□□ 0.11
SEMA3DO95025 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.75■□□□□ 0.11
SEMA3DO95025 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
SEMA3DO95025 SLC25A1P1-201ENST00000528351 927 ntBASIC15.75■□□□□ 0.11
SEMA3DO95025 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.75■□□□□ 0.11
SEMA3DO95025 PDPK2P-202ENST00000562415 1191 ntBASIC15.75■□□□□ 0.11
SEMA3DO95025 AC106730.1-201ENST00000566722 1090 ntBASIC15.75■□□□□ 0.11
SEMA3DO95025 AC018845.2-201ENST00000568326 409 ntBASIC15.75■□□□□ 0.11
SEMA3DO95025 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
SEMA3DO95025 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.75■□□□□ 0.11
SEMA3DO95025 FAM197Y3-203ENST00000618346 717 ntBASIC15.75■□□□□ 0.11
SEMA3DO95025 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.75■□□□□ 0.11
SEMA3DO95025 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 AC026691.1-201ENST00000602502 2017 ntBASIC15.75■□□□□ 0.11
SEMA3DO95025 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 AL136379.1-201ENST00000623471 2642 ntBASIC15.75■□□□□ 0.11
SEMA3DO95025 AL662844.4-201ENST00000606367 2838 ntBASIC15.75■□□□□ 0.11
SEMA3DO95025 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.75■□□□□ 0.11
SEMA3DO95025 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
SEMA3DO95025 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 2029.5 ms