Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 PNMT-202ENST00000394246 821 ntTSL 2 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 KRT18P34-201ENST00000488218 1270 ntBASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 LSM12-202ENST00000585388 942 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 AL355385.1-201ENST00000606123 409 ntBASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 AC084121.4-201ENST00000641598 221 ntBASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 AF228730.8-201ENST00000642140 221 ntBASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 NARF-206ENST00000457415 1668 ntTSL 5 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC18.34■□□□□ 0.53
COL4A3BPQ9Y5P4 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.33■□□□□ 0.53
COL4A3BPQ9Y5P4 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.33■□□□□ 0.53
COL4A3BPQ9Y5P4 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A3BPQ9Y5P4 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A3BPQ9Y5P4 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.33■□□□□ 0.53
COL4A3BPQ9Y5P4 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
COL4A3BPQ9Y5P4 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A3BPQ9Y5P4 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC18.33■□□□□ 0.53
COL4A3BPQ9Y5P4 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
COL4A3BPQ9Y5P4 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 CYMP-203ENST00000474680 1263 ntBASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 AC025678.2-201ENST00000562061 970 ntBASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 AC106028.4-201ENST00000614509 607 ntBASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 AC026691.1-201ENST00000602502 2017 ntBASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
COL4A3BPQ9Y5P4 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
COL4A3BPQ9Y5P4 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms