Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 MTHFR-217ENST00000641820 1569 ntBASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 IGHV3-47-201ENST00000425060 335 ntBASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 AP002383.4-201ENST00000442518 975 ntBASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 HLA-J-202ENST00000469281 1241 ntBASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 GZMM-202ENST00000592501 941 ntTSL 3 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 HNRNPRP1-201ENST00000453465 1695 ntBASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CHMP1AQ9HD42 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 AC004817.3-201ENST00000602957 2129 ntBASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 AP002414.2-201ENST00000591780 3365 ntBASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 ABCD1P5-201ENST00000445663 754 ntBASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 AC092329.2-201ENST00000598402 547 ntBASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 AC010331.1-201ENST00000611423 582 ntBASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 AC099063.4-201ENST00000641099 1602 ntBASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 KRT8P49-201ENST00000604166 1432 ntBASIC14.21□□□□□ -0.13
CHMP1AQ9HD42 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
CHMP1AQ9HD42 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
CHMP1AQ9HD42 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
CHMP1AQ9HD42 AC006538.1-201ENST00000567905 1585 ntBASIC14.21□□□□□ -0.14
CHMP1AQ9HD42 LINC02228-204ENST00000642115 2962 ntBASIC14.21□□□□□ -0.14
CHMP1AQ9HD42 AC243591.1-201ENST00000452967 1364 ntBASIC14.21□□□□□ -0.14
CHMP1AQ9HD42 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
CHMP1AQ9HD42 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CHMP1AQ9HD42 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
CHMP1AQ9HD42 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CHMP1AQ9HD42 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms