Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC18.77■□□□□ 0.6
USP28Q96RU2 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
USP28Q96RU2 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
USP28Q96RU2 U82695.1-201ENST00000635752 1889 ntBASIC18.77■□□□□ 0.6
USP28Q96RU2 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
USP28Q96RU2 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.77■□□□□ 0.59
USP28Q96RU2 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC18.77■□□□□ 0.59
USP28Q96RU2 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
USP28Q96RU2 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
USP28Q96RU2 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC18.77■□□□□ 0.59
USP28Q96RU2 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
USP28Q96RU2 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC18.77■□□□□ 0.59
USP28Q96RU2 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USP28Q96RU2 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP28Q96RU2 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.76■□□□□ 0.59
USP28Q96RU2 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP28Q96RU2 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP28Q96RU2 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USP28Q96RU2 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
USP28Q96RU2 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP28Q96RU2 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.76■□□□□ 0.59
USP28Q96RU2 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.76■□□□□ 0.59
USP28Q96RU2 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.76■□□□□ 0.59
USP28Q96RU2 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC18.76■□□□□ 0.59
USP28Q96RU2 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
USP28Q96RU2 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.76■□□□□ 0.59
USP28Q96RU2 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.76■□□□□ 0.59
USP28Q96RU2 KRT126P-201ENST00000549467 1181 ntBASIC18.76■□□□□ 0.59
USP28Q96RU2 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC18.76■□□□□ 0.59
USP28Q96RU2 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC18.76■□□□□ 0.59
USP28Q96RU2 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP28Q96RU2 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USP28Q96RU2 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
USP28Q96RU2 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
USP28Q96RU2 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
USP28Q96RU2 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
USP28Q96RU2 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
USP28Q96RU2 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
USP28Q96RU2 AC092384.3-202ENST00000564646 2873 ntBASIC18.75■□□□□ 0.59
USP28Q96RU2 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 HLA-A-201ENST00000376802 1334 ntBASIC18.75■□□□□ 0.59
USP28Q96RU2 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
USP28Q96RU2 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 WARS-232ENST00000556645 2508 ntTSL 5 BASIC18.75■□□□□ 0.59
USP28Q96RU2 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.75■□□□□ 0.59
USP28Q96RU2 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.75■□□□□ 0.59
USP28Q96RU2 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
USP28Q96RU2 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
USP28Q96RU2 FALEC-201ENST00000416894 566 ntTSL 3 BASIC18.75■□□□□ 0.59
USP28Q96RU2 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.75■□□□□ 0.59
USP28Q96RU2 AC093724.1-201ENST00000448659 1027 ntBASIC18.75■□□□□ 0.59
USP28Q96RU2 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
USP28Q96RU2 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC18.75■□□□□ 0.59
USP28Q96RU2 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
USP28Q96RU2 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.75■□□□□ 0.59
USP28Q96RU2 AL009183.1-201ENST00000603760 355 ntBASIC18.75■□□□□ 0.59
USP28Q96RU2 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC18.75■□□□□ 0.59
USP28Q96RU2 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC18.75■□□□□ 0.59
USP28Q96RU2 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC18.75■□□□□ 0.59
USP28Q96RU2 AC008677.1-201ENST00000519230 1561 ntBASIC18.75■□□□□ 0.59
USP28Q96RU2 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC18.75■□□□□ 0.59
USP28Q96RU2 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
USP28Q96RU2 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
USP28Q96RU2 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP28Q96RU2 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC18.74■□□□□ 0.59
USP28Q96RU2 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
USP28Q96RU2 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.74■□□□□ 0.59
USP28Q96RU2 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.74■□□□□ 0.59
USP28Q96RU2 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
USP28Q96RU2 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
USP28Q96RU2 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
USP28Q96RU2 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP28Q96RU2 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC18.74■□□□□ 0.59
USP28Q96RU2 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.74■□□□□ 0.59
USP28Q96RU2 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC18.74■□□□□ 0.59
USP28Q96RU2 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USP28Q96RU2 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC18.74■□□□□ 0.59
USP28Q96RU2 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC18.74■□□□□ 0.59
USP28Q96RU2 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC18.74■□□□□ 0.59
USP28Q96RU2 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.74■□□□□ 0.59
USP28Q96RU2 AC109635.5-201ENST00000533593 962 ntBASIC18.74■□□□□ 0.59
USP28Q96RU2 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.74■□□□□ 0.59
USP28Q96RU2 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.74■□□□□ 0.59
USP28Q96RU2 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.74■□□□□ 0.59
USP28Q96RU2 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC18.74■□□□□ 0.59
USP28Q96RU2 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.74■□□□□ 0.59
USP28Q96RU2 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms