Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 AC105233.2-201ENST00000523697 349 ntBASIC15.27■□□□□ 0.04
BEST3Q8N1M1 AF228730.5-201ENST00000530288 346 ntBASIC15.27■□□□□ 0.04
BEST3Q8N1M1 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 DUT-210ENST00000559935 569 ntTSL 3 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
BEST3Q8N1M1 AC092364.2-202ENST00000597012 1073 ntBASIC15.27■□□□□ 0.04
BEST3Q8N1M1 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BEST3Q8N1M1 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC15.27■□□□□ 0.03
BEST3Q8N1M1 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.27■□□□□ 0.03
BEST3Q8N1M1 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC15.27■□□□□ 0.03
BEST3Q8N1M1 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.27■□□□□ 0.03
BEST3Q8N1M1 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
BEST3Q8N1M1 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
BEST3Q8N1M1 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
BEST3Q8N1M1 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.03
BEST3Q8N1M1 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
BEST3Q8N1M1 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 AC060834.1-201ENST00000443027 2032 ntBASIC15.26■□□□□ 0.03
BEST3Q8N1M1 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 AC107890.1-201ENST00000422478 521 ntBASIC15.26■□□□□ 0.03
BEST3Q8N1M1 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 BCRP1-201ENST00000444246 691 ntBASIC15.26■□□□□ 0.03
BEST3Q8N1M1 AC093214.1-201ENST00000511688 1107 ntBASIC15.26■□□□□ 0.03
BEST3Q8N1M1 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 MIR3197-201ENST00000582241 73 ntBASIC15.26■□□□□ 0.03
BEST3Q8N1M1 AL390955.2-201ENST00000603032 514 ntBASIC15.26■□□□□ 0.03
BEST3Q8N1M1 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 PC-204ENST00000524491 1714 ntTSL 2 BASIC15.26■□□□□ 0.03
BEST3Q8N1M1 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 MIR943-201ENST00000401286 94 ntBASIC15.25■□□□□ 0.03
BEST3Q8N1M1 AC142381.1-201ENST00000426099 345 ntBASIC15.25■□□□□ 0.03
BEST3Q8N1M1 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 PRYP6-201ENST00000514804 343 ntBASIC15.25■□□□□ 0.03
BEST3Q8N1M1 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 SNX33P1-201ENST00000592116 1762 ntBASIC15.25■□□□□ 0.03
BEST3Q8N1M1 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
BEST3Q8N1M1 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC15.25■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms