Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 AC105233.2-201ENST00000523697 349 ntBASIC16.03■□□□□ 0.16
VRK3Q8IV63 AF228730.5-201ENST00000530288 346 ntBASIC16.03■□□□□ 0.16
VRK3Q8IV63 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 AP000842.3-202ENST00000569238 1080 ntBASIC16.03■□□□□ 0.16
VRK3Q8IV63 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 U82695.1-201ENST00000635752 1889 ntBASIC16.03■□□□□ 0.16
VRK3Q8IV63 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VRK3Q8IV63 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VRK3Q8IV63 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VRK3Q8IV63 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VRK3Q8IV63 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 MIR346-201ENST00000362234 95 ntBASIC16.02■□□□□ 0.16
VRK3Q8IV63 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 MIR1233-2-201ENST00000408138 82 ntBASIC16.02■□□□□ 0.16
VRK3Q8IV63 MIR1233-1-201ENST00000408722 82 ntBASIC16.02■□□□□ 0.16
VRK3Q8IV63 FAM58DP-201ENST00000428076 619 ntBASIC16.02■□□□□ 0.16
VRK3Q8IV63 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VRK3Q8IV63 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
VRK3Q8IV63 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
VRK3Q8IV63 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.02■□□□□ 0.16
VRK3Q8IV63 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VRK3Q8IV63 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.15
VRK3Q8IV63 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VRK3Q8IV63 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VRK3Q8IV63 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VRK3Q8IV63 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
VRK3Q8IV63 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VRK3Q8IV63 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VRK3Q8IV63 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VRK3Q8IV63 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
VRK3Q8IV63 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VRK3Q8IV63 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
VRK3Q8IV63 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
VRK3Q8IV63 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VRK3Q8IV63 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VRK3Q8IV63 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VRK3Q8IV63 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
VRK3Q8IV63 BLK-205ENST00000529894 2017 ntTSL 5 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 AC026691.1-201ENST00000602502 2017 ntBASIC16.01■□□□□ 0.15
VRK3Q8IV63 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 UXT-AS1-201ENST00000590504 1525 ntBASIC16.01■□□□□ 0.15
VRK3Q8IV63 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
VRK3Q8IV63 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
VRK3Q8IV63 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 IGHV3-62-201ENST00000520057 340 ntBASIC16.01■□□□□ 0.15
VRK3Q8IV63 SLC25A39P2-201ENST00000537614 270 ntBASIC16.01■□□□□ 0.15
VRK3Q8IV63 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.01■□□□□ 0.15
VRK3Q8IV63 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms