Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
USP54Q70EL1 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
USP54Q70EL1 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
USP54Q70EL1 UBALD1-205ENST00000590891 2641 ntBASIC21.4■■□□□ 1.02
USP54Q70EL1 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
USP54Q70EL1 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC21.4■■□□□ 1.02
USP54Q70EL1 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC21.4■■□□□ 1.02
USP54Q70EL1 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
USP54Q70EL1 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
USP54Q70EL1 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC21.4■■□□□ 1.02
USP54Q70EL1 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
USP54Q70EL1 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
USP54Q70EL1 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
USP54Q70EL1 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
USP54Q70EL1 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
USP54Q70EL1 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
USP54Q70EL1 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC21.4■■□□□ 1.02
USP54Q70EL1 RPF1-202ENST00000370656 724 ntTSL 2 BASIC21.4■■□□□ 1.02
USP54Q70EL1 RPL28-203ENST00000428193 573 ntTSL 2 BASIC21.4■■□□□ 1.02
USP54Q70EL1 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC21.4■■□□□ 1.02
USP54Q70EL1 KRT43P-201ENST00000434019 910 ntBASIC21.4■■□□□ 1.02
USP54Q70EL1 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC21.4■■□□□ 1.02
USP54Q70EL1 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC21.4■■□□□ 1.02
USP54Q70EL1 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
USP54Q70EL1 RPL28-207ENST00000558815 616 ntTSL 2 BASIC21.4■■□□□ 1.02
USP54Q70EL1 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC21.4■■□□□ 1.02
USP54Q70EL1 AC133539.2-201ENST00000604757 467 ntBASIC21.4■■□□□ 1.02
USP54Q70EL1 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC21.4■■□□□ 1.02
USP54Q70EL1 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
USP54Q70EL1 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC21.4■■□□□ 1.02
USP54Q70EL1 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
USP54Q70EL1 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC21.39■■□□□ 1.02
USP54Q70EL1 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC21.39■■□□□ 1.02
USP54Q70EL1 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
USP54Q70EL1 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.02
USP54Q70EL1 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC21.39■■□□□ 1.02
USP54Q70EL1 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC21.39■■□□□ 1.02
USP54Q70EL1 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC21.39■■□□□ 1.01
USP54Q70EL1 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
USP54Q70EL1 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
USP54Q70EL1 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
USP54Q70EL1 LBX2-201ENST00000341396 886 ntTSL 3 BASIC21.39■■□□□ 1.01
USP54Q70EL1 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
USP54Q70EL1 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC21.39■■□□□ 1.01
USP54Q70EL1 CTBP2P5-201ENST00000454986 1264 ntBASIC21.39■■□□□ 1.01
USP54Q70EL1 VDAC1P7-201ENST00000462417 847 ntBASIC21.39■■□□□ 1.01
USP54Q70EL1 RPL13AP25-201ENST00000484130 612 ntBASIC21.39■■□□□ 1.01
USP54Q70EL1 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC21.39■■□□□ 1.01
USP54Q70EL1 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC21.39■■□□□ 1.01
USP54Q70EL1 APRT-204ENST00000563655 709 ntTSL 5 BASIC21.39■■□□□ 1.01
USP54Q70EL1 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC21.39■■□□□ 1.01
USP54Q70EL1 PIGL-212ENST00000581006 554 ntTSL 4 BASIC21.39■■□□□ 1.01
USP54Q70EL1 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC21.39■■□□□ 1.01
USP54Q70EL1 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC21.39■■□□□ 1.01
USP54Q70EL1 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
USP54Q70EL1 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
USP54Q70EL1 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC21.39■■□□□ 1.01
USP54Q70EL1 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC21.39■■□□□ 1.01
USP54Q70EL1 TP73-209ENST00000603362 1668 ntTSL 5 BASIC21.39■■□□□ 1.01
USP54Q70EL1 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
USP54Q70EL1 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
USP54Q70EL1 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
USP54Q70EL1 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC21.38■■□□□ 1.01
USP54Q70EL1 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
USP54Q70EL1 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
USP54Q70EL1 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
USP54Q70EL1 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
USP54Q70EL1 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
USP54Q70EL1 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC21.38■■□□□ 1.01
USP54Q70EL1 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
USP54Q70EL1 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC21.38■■□□□ 1.01
USP54Q70EL1 AC022137.2-201ENST00000503482 481 ntBASIC21.38■■□□□ 1.01
USP54Q70EL1 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC21.38■■□□□ 1.01
USP54Q70EL1 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC21.38■■□□□ 1.01
USP54Q70EL1 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC21.38■■□□□ 1.01
USP54Q70EL1 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC21.38■■□□□ 1.01
USP54Q70EL1 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC21.38■■□□□ 1.01
USP54Q70EL1 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
USP54Q70EL1 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
USP54Q70EL1 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
USP54Q70EL1 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
USP54Q70EL1 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
USP54Q70EL1 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
USP54Q70EL1 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC21.38■■□□□ 1.01
USP54Q70EL1 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC21.38■■□□□ 1.01
USP54Q70EL1 AGER-206ENST00000375070 1463 ntTSL 5 BASIC21.38■■□□□ 1.01
USP54Q70EL1 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
USP54Q70EL1 MTHFR-217ENST00000641820 1569 ntBASIC21.38■■□□□ 1.01
USP54Q70EL1 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 AL133267.1-201ENST00000398220 340 ntBASIC21.37■■□□□ 1.01
USP54Q70EL1 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
USP54Q70EL1 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC21.37■■□□□ 1.01
USP54Q70EL1 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC21.37■■□□□ 1.01
USP54Q70EL1 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC21.37■■□□□ 1.01
USP54Q70EL1 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
USP54Q70EL1 TUBB1P2-201ENST00000422712 1306 ntBASIC21.37■■□□□ 1.01
USP54Q70EL1 TUBB1P1-201ENST00000503144 1300 ntBASIC21.37■■□□□ 1.01
USP54Q70EL1 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
USP54Q70EL1 REXO1L1P-202ENST00000608646 1974 ntBASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms