Protein–RNA interactions for Protein: Q12824

SMARCB1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, humanhuman

Predictions only

Length 385 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1Q12824 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
SMARCB1Q12824 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 PSMB9-207ENST00000374859 782 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 FO393414.2-201ENST00000405153 598 ntBASIC17.12■□□□□ 0.33
SMARCB1Q12824 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 PIN1P1-201ENST00000412108 996 ntBASIC17.12■□□□□ 0.33
SMARCB1Q12824 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 AC009407.1-201ENST00000568958 598 ntBASIC17.12■□□□□ 0.33
SMARCB1Q12824 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.12■□□□□ 0.33
SMARCB1Q12824 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
SMARCB1Q12824 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 SERBP1P5-201ENST00000510079 1181 ntBASIC17.11■□□□□ 0.33
SMARCB1Q12824 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 AC027307.3-201ENST00000594262 1100 ntBASIC17.11■□□□□ 0.33
SMARCB1Q12824 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.11■□□□□ 0.33
SMARCB1Q12824 AL033527.5-202ENST00000641632 1098 ntBASIC17.11■□□□□ 0.33
SMARCB1Q12824 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC17.11■□□□□ 0.33
SMARCB1Q12824 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
SMARCB1Q12824 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.11■□□□□ 0.33
SMARCB1Q12824 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SMARCB1Q12824 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
SMARCB1Q12824 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.1■□□□□ 0.33
SMARCB1Q12824 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC17.1■□□□□ 0.33
SMARCB1Q12824 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.1■□□□□ 0.33
SMARCB1Q12824 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC17.1■□□□□ 0.33
SMARCB1Q12824 AC010336.2-201ENST00000564226 506 ntBASIC17.1■□□□□ 0.33
SMARCB1Q12824 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
SMARCB1Q12824 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC17.1■□□□□ 0.33
SMARCB1Q12824 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
SMARCB1Q12824 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
SMARCB1Q12824 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms