Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
UBA52P62987 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC14.26□□□□□ -0.13
UBA52P62987 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
UBA52P62987 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 CD9-202ENST00000382515 1229 ntTSL 5 BASIC14.26□□□□□ -0.13
UBA52P62987 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
UBA52P62987 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.26□□□□□ -0.13
UBA52P62987 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.26□□□□□ -0.13
UBA52P62987 HNRNPA1P28-201ENST00000424481 961 ntBASIC14.26□□□□□ -0.13
UBA52P62987 LAGE3P1-201ENST00000425356 484 ntBASIC14.26□□□□□ -0.13
UBA52P62987 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC14.26□□□□□ -0.13
UBA52P62987 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC14.26□□□□□ -0.13
UBA52P62987 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.26□□□□□ -0.13
UBA52P62987 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.26□□□□□ -0.13
UBA52P62987 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC14.26□□□□□ -0.13
UBA52P62987 RNF151-202ENST00000569210 853 ntTSL 2 BASIC14.26□□□□□ -0.13
UBA52P62987 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 HOTTIP_1.1-201ENST00000620415 57 ntBASIC14.26□□□□□ -0.13
UBA52P62987 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
UBA52P62987 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
UBA52P62987 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
UBA52P62987 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC14.26□□□□□ -0.13
UBA52P62987 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.26□□□□□ -0.13
UBA52P62987 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.26□□□□□ -0.13
UBA52P62987 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
UBA52P62987 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 AP002414.3-201ENST00000589352 1468 ntBASIC14.25□□□□□ -0.13
UBA52P62987 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
UBA52P62987 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
UBA52P62987 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.25□□□□□ -0.13
UBA52P62987 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
UBA52P62987 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.25□□□□□ -0.13
UBA52P62987 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
UBA52P62987 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.25□□□□□ -0.13
UBA52P62987 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC14.25□□□□□ -0.13
UBA52P62987 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
UBA52P62987 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC14.25□□□□□ -0.13
UBA52P62987 RPS8P6-201ENST00000426177 609 ntBASIC14.25□□□□□ -0.13
UBA52P62987 FIS1-203ENST00000442303 631 ntTSL 3 BASIC14.25□□□□□ -0.13
UBA52P62987 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC14.25□□□□□ -0.13
UBA52P62987 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC14.25□□□□□ -0.13
UBA52P62987 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.25□□□□□ -0.13
UBA52P62987 AP001160.2-201ENST00000596071 487 ntBASIC14.25□□□□□ -0.13
UBA52P62987 AL139424.1-201ENST00000607572 797 ntBASIC14.25□□□□□ -0.13
UBA52P62987 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
UBA52P62987 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.25□□□□□ -0.13
UBA52P62987 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
UBA52P62987 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
UBA52P62987 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
UBA52P62987 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.25□□□□□ -0.13
UBA52P62987 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
UBA52P62987 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
UBA52P62987 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
UBA52P62987 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UBA52P62987 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UBA52P62987 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UBA52P62987 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UBA52P62987 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UBA52P62987 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
UBA52P62987 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
UBA52P62987 AC022532.1-201ENST00000624563 1728 ntBASIC14.24□□□□□ -0.13
UBA52P62987 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
UBA52P62987 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
UBA52P62987 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
UBA52P62987 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms