Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 REXO1L8P-201ENST00000604378 1897 ntBASIC26.94■■□□□ 1.9
CUX1P39880 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC26.94■■□□□ 1.9
CUX1P39880 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC26.94■■□□□ 1.9
CUX1P39880 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CUX1P39880 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CUX1P39880 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC26.93■■□□□ 1.9
CUX1P39880 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC26.93■■□□□ 1.9
CUX1P39880 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC26.93■■□□□ 1.9
CUX1P39880 PCDHB18P-201ENST00000524813 2368 ntBASIC26.93■■□□□ 1.9
CUX1P39880 GPAA1P2-201ENST00000417923 928 ntBASIC26.93■■□□□ 1.9
CUX1P39880 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC26.93■■□□□ 1.9
CUX1P39880 USP40-206ENST00000443711 628 ntTSL 2 BASIC26.93■■□□□ 1.9
CUX1P39880 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC26.93■■□□□ 1.9
CUX1P39880 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CUX1P39880 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
CUX1P39880 MIR3615-201ENST00000581999 87 ntBASIC26.93■■□□□ 1.9
CUX1P39880 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CUX1P39880 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CUX1P39880 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CUX1P39880 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC26.92■■□□□ 1.9
CUX1P39880 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC26.92■■□□□ 1.9
CUX1P39880 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC26.92■■□□□ 1.9
CUX1P39880 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CUX1P39880 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CUX1P39880 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC26.92■■□□□ 1.9
CUX1P39880 RHOXF1P1-202ENST00000635473 501 ntBASIC26.92■■□□□ 1.9
CUX1P39880 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC26.92■■□□□ 1.9
CUX1P39880 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC26.92■■□□□ 1.9
CUX1P39880 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC26.92■■□□□ 1.9
CUX1P39880 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC26.92■■□□□ 1.9
CUX1P39880 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC26.91■■□□□ 1.9
CUX1P39880 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC26.91■■□□□ 1.9
CUX1P39880 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC26.91■■□□□ 1.9
CUX1P39880 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC26.91■■□□□ 1.9
CUX1P39880 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC26.91■■□□□ 1.9
CUX1P39880 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC26.91■■□□□ 1.9
CUX1P39880 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC26.91■■□□□ 1.9
CUX1P39880 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
CUX1P39880 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CUX1P39880 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
CUX1P39880 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CUX1P39880 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC26.91■■□□□ 1.9
CUX1P39880 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CUX1P39880 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC26.91■■□□□ 1.9
CUX1P39880 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CUX1P39880 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CUX1P39880 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
CUX1P39880 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CUX1P39880 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC26.91■■□□□ 1.9
CUX1P39880 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC26.91■■□□□ 1.9
CUX1P39880 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CUX1P39880 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC26.91■■□□□ 1.9
CUX1P39880 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC26.91■■□□□ 1.9
CUX1P39880 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CUX1P39880 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC26.9■■□□□ 1.9
CUX1P39880 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CUX1P39880 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC26.9■■□□□ 1.9
CUX1P39880 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC26.9■■□□□ 1.9
CUX1P39880 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CUX1P39880 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CUX1P39880 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC26.9■■□□□ 1.9
CUX1P39880 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CUX1P39880 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CUX1P39880 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CUX1P39880 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC26.9■■□□□ 1.9
CUX1P39880 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC26.9■■□□□ 1.9
CUX1P39880 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CUX1P39880 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC26.9■■□□□ 1.9
CUX1P39880 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC26.9■■□□□ 1.9
CUX1P39880 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC26.9■■□□□ 1.9
CUX1P39880 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
CUX1P39880 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC26.9■■□□□ 1.9
CUX1P39880 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CUX1P39880 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC26.9■■□□□ 1.9
CUX1P39880 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC26.9■■□□□ 1.9
CUX1P39880 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC26.9■■□□□ 1.9
CUX1P39880 AC006033.1-201ENST00000440505 426 ntBASIC26.9■■□□□ 1.9
CUX1P39880 YBX1P6-201ENST00000442962 1002 ntBASIC26.9■■□□□ 1.9
CUX1P39880 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC26.9■■□□□ 1.9
CUX1P39880 AC022137.2-201ENST00000503482 481 ntBASIC26.9■■□□□ 1.9
CUX1P39880 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC26.9■■□□□ 1.9
CUX1P39880 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC26.9■■□□□ 1.9
CUX1P39880 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC26.9■■□□□ 1.9
CUX1P39880 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC26.9■■□□□ 1.9
CUX1P39880 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC26.9■■□□□ 1.9
CUX1P39880 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC26.9■■□□□ 1.9
CUX1P39880 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC26.89■■□□□ 1.9
CUX1P39880 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
CUX1P39880 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
CUX1P39880 AGER-206ENST00000375070 1463 ntTSL 5 BASIC26.89■■□□□ 1.9
CUX1P39880 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC26.89■■□□□ 1.9
CUX1P39880 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC26.89■■□□□ 1.9
CUX1P39880 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC26.89■■□□□ 1.9
CUX1P39880 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.9
CUX1P39880 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC26.89■■□□□ 1.9
CUX1P39880 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
CUX1P39880 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
CUX1P39880 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC26.89■■□□□ 1.89
CUX1P39880 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CUX1P39880 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC26.89■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms