Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
SCN4AP35499 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
SCN4AP35499 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN4AP35499 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SCN4AP35499 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
SCN4AP35499 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN4AP35499 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19■□□□□ 0.63
SCN4AP35499 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19■□□□□ 0.63
SCN4AP35499 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SCN4AP35499 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC19■□□□□ 0.63
SCN4AP35499 HSPB1P2-201ENST00000448722 546 ntBASIC19■□□□□ 0.63
SCN4AP35499 FTLP1-201ENST00000449155 526 ntBASIC19■□□□□ 0.63
SCN4AP35499 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC19■□□□□ 0.63
SCN4AP35499 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC19■□□□□ 0.63
SCN4AP35499 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC19■□□□□ 0.63
SCN4AP35499 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN4AP35499 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
SCN4AP35499 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
SCN4AP35499 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
SCN4AP35499 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN4AP35499 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC19■□□□□ 0.63
SCN4AP35499 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SCN4AP35499 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC19■□□□□ 0.63
SCN4AP35499 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19■□□□□ 0.63
SCN4AP35499 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC19■□□□□ 0.63
SCN4AP35499 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC19■□□□□ 0.63
SCN4AP35499 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN4AP35499 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SCN4AP35499 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SCN4AP35499 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC19■□□□□ 0.63
SCN4AP35499 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC19■□□□□ 0.63
SCN4AP35499 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC19■□□□□ 0.63
SCN4AP35499 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC19■□□□□ 0.63
SCN4AP35499 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC19■□□□□ 0.63
SCN4AP35499 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC19■□□□□ 0.63
SCN4AP35499 MIR5572-201ENST00000583188 137 ntBASIC19■□□□□ 0.63
SCN4AP35499 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC19■□□□□ 0.63
SCN4AP35499 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC19■□□□□ 0.63
SCN4AP35499 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC18.99■□□□□ 0.63
SCN4AP35499 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
SCN4AP35499 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC18.99■□□□□ 0.63
SCN4AP35499 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
SCN4AP35499 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC18.99■□□□□ 0.63
SCN4AP35499 DEF8-202ENST00000418391 852 ntTSL 2 BASIC18.99■□□□□ 0.63
SCN4AP35499 FNTAP2-201ENST00000430308 634 ntBASIC18.99■□□□□ 0.63
SCN4AP35499 ELP6-209ENST00000446787 894 ntTSL 3 BASIC18.99■□□□□ 0.63
SCN4AP35499 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC18.99■□□□□ 0.63
SCN4AP35499 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC18.99■□□□□ 0.63
SCN4AP35499 AC093813.1-201ENST00000605066 256 ntBASIC18.99■□□□□ 0.63
SCN4AP35499 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
SCN4AP35499 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SCN4AP35499 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC18.99■□□□□ 0.63
SCN4AP35499 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC18.99■□□□□ 0.63
SCN4AP35499 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
SCN4AP35499 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SCN4AP35499 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 AC018735.1-201ENST00000437208 1502 ntBASIC18.98■□□□□ 0.63
SCN4AP35499 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC18.98■□□□□ 0.63
SCN4AP35499 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
SCN4AP35499 HNRNPA1P32-201ENST00000396326 963 ntBASIC18.98■□□□□ 0.63
SCN4AP35499 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
SCN4AP35499 RPL17P11-201ENST00000417593 544 ntBASIC18.98■□□□□ 0.63
SCN4AP35499 AL590640.2-201ENST00000457038 527 ntBASIC18.98■□□□□ 0.63
SCN4AP35499 SDHD-202ENST00000525291 790 ntTSL 3 BASIC18.98■□□□□ 0.63
SCN4AP35499 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 HNRNPUP1-201ENST00000554987 333 ntBASIC18.98■□□□□ 0.63
SCN4AP35499 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC18.98■□□□□ 0.63
SCN4AP35499 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.98■□□□□ 0.63
SCN4AP35499 AC015910.1-201ENST00000579400 975 ntBASIC18.98■□□□□ 0.63
SCN4AP35499 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC18.98■□□□□ 0.63
SCN4AP35499 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC18.98■□□□□ 0.63
SCN4AP35499 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SCN4AP35499 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms