Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCNAP12004 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.07■□□□□ 0.16
PCNAP12004 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCNAP12004 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.07■□□□□ 0.16
PCNAP12004 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCNAP12004 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCNAP12004 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.07■□□□□ 0.16
PCNAP12004 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCNAP12004 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCNAP12004 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PCNAP12004 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC16.07■□□□□ 0.16
PCNAP12004 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PCNAP12004 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
PCNAP12004 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.06■□□□□ 0.16
PCNAP12004 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
PCNAP12004 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
PCNAP12004 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PCNAP12004 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.06■□□□□ 0.16
PCNAP12004 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC16.06■□□□□ 0.16
PCNAP12004 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
PCNAP12004 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC16.06■□□□□ 0.16
PCNAP12004 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC16.06■□□□□ 0.16
PCNAP12004 AL513480.1-201ENST00000451731 511 ntBASIC16.06■□□□□ 0.16
PCNAP12004 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PCNAP12004 MMP17-203ENST00000535004 719 ntTSL 3 BASIC16.06■□□□□ 0.16
PCNAP12004 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC16.06■□□□□ 0.16
PCNAP12004 ACTL9-202ENST00000612068 1252 ntBASIC16.06■□□□□ 0.16
PCNAP12004 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.06■□□□□ 0.16
PCNAP12004 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.06■□□□□ 0.16
PCNAP12004 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 AL031731.1-201ENST00000642131 2094 ntBASIC16.06■□□□□ 0.16
PCNAP12004 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCNAP12004 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
PCNAP12004 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PCNAP12004 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.05■□□□□ 0.16
PCNAP12004 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PCNAP12004 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PCNAP12004 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.05■□□□□ 0.16
PCNAP12004 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.05■□□□□ 0.16
PCNAP12004 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 AC063926.3-201ENST00000624734 5658 ntBASIC16.05■□□□□ 0.16
PCNAP12004 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 VN2R19P-201ENST00000442399 1052 ntBASIC16.05■□□□□ 0.16
PCNAP12004 FAM185BP-201ENST00000443595 716 ntBASIC16.05■□□□□ 0.16
PCNAP12004 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC16.05■□□□□ 0.16
PCNAP12004 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC16.05■□□□□ 0.16
PCNAP12004 IGHV3-22-201ENST00000520721 359 ntBASIC16.05■□□□□ 0.16
PCNAP12004 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.05■□□□□ 0.16
PCNAP12004 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC16.05■□□□□ 0.16
PCNAP12004 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC16.05■□□□□ 0.16
PCNAP12004 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.05■□□□□ 0.16
PCNAP12004 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.05■□□□□ 0.16
PCNAP12004 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC16.05■□□□□ 0.16
PCNAP12004 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.05■□□□□ 0.16
PCNAP12004 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
PCNAP12004 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC16.05■□□□□ 0.16
PCNAP12004 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC16.05■□□□□ 0.16
PCNAP12004 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 AC105917.1-201ENST00000506637 2539 ntBASIC16.05■□□□□ 0.16
PCNAP12004 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PCNAP12004 GGT3P-204ENST00000453783 1664 ntBASIC16.05■□□□□ 0.16
PCNAP12004 AC022188.1-201ENST00000620960 1664 ntBASIC16.05■□□□□ 0.16
PCNAP12004 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PCNAP12004 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCNAP12004 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PCNAP12004 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms