Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC16.58■□□□□ 0.24
VIMP08670 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.58■□□□□ 0.24
VIMP08670 AC016027.1-202ENST00000607927 1699 ntBASIC16.58■□□□□ 0.24
VIMP08670 KCP-203ENST00000610776 5108 ntTSL 5 BASIC16.58■□□□□ 0.24
VIMP08670 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VIMP08670 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
VIMP08670 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
VIMP08670 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.58■□□□□ 0.24
VIMP08670 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.58■□□□□ 0.24
VIMP08670 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
VIMP08670 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC16.57■□□□□ 0.24
VIMP08670 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 AL031731.1-201ENST00000642131 2094 ntBASIC16.57■□□□□ 0.24
VIMP08670 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
VIMP08670 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.57■□□□□ 0.24
VIMP08670 AL512652.2-201ENST00000625156 1716 ntBASIC16.57■□□□□ 0.24
VIMP08670 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 SPDYE15P-201ENST00000424157 909 ntBASIC16.57■□□□□ 0.24
VIMP08670 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
VIMP08670 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
VIMP08670 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.57■□□□□ 0.24
VIMP08670 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
VIMP08670 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC16.57■□□□□ 0.24
VIMP08670 AL390719.2-201ENST00000606993 987 ntBASIC16.57■□□□□ 0.24
VIMP08670 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.57■□□□□ 0.24
VIMP08670 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
VIMP08670 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC16.57■□□□□ 0.24
VIMP08670 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
VIMP08670 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VIMP08670 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
VIMP08670 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.56■□□□□ 0.24
VIMP08670 SH2D3C-206ENST00000429553 2794 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.56■□□□□ 0.24
VIMP08670 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VIMP08670 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC16.56■□□□□ 0.24
VIMP08670 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VIMP08670 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.56■□□□□ 0.24
VIMP08670 AC106881.1-201ENST00000605849 3329 ntBASIC16.56■□□□□ 0.24
VIMP08670 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC16.56■□□□□ 0.24
VIMP08670 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.56■□□□□ 0.24
VIMP08670 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC16.56■□□□□ 0.24
VIMP08670 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.56■□□□□ 0.24
VIMP08670 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
VIMP08670 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC16.56■□□□□ 0.24
VIMP08670 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.56■□□□□ 0.24
VIMP08670 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC16.56■□□□□ 0.24
VIMP08670 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.56■□□□□ 0.24
VIMP08670 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.56■□□□□ 0.24
VIMP08670 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.56■□□□□ 0.24
VIMP08670 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.56■□□□□ 0.24
VIMP08670 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC16.56■□□□□ 0.24
VIMP08670 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
VIMP08670 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.56■□□□□ 0.24
VIMP08670 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
VIMP08670 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
VIMP08670 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms