Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.64■□□□□ 0.25
HLA-DQB2P05538 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.64■□□□□ 0.25
HLA-DQB2P05538 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQB2P05538 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQB2P05538 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQB2P05538 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQB2P05538 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.64■□□□□ 0.25
HLA-DQB2P05538 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.64■□□□□ 0.25
HLA-DQB2P05538 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQB2P05538 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQB2P05538 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HLA-DQB2P05538 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HLA-DQB2P05538 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 COA5-202ENST00000409997 557 ntTSL 4 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 UPF3AP3-201ENST00000420996 769 ntBASIC16.63■□□□□ 0.25
HLA-DQB2P05538 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 AC105233.2-201ENST00000523697 349 ntBASIC16.63■□□□□ 0.25
HLA-DQB2P05538 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 AF228730.5-201ENST00000530288 346 ntBASIC16.63■□□□□ 0.25
HLA-DQB2P05538 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 AL589702.1-201ENST00000641229 1509 ntBASIC16.63■□□□□ 0.25
HLA-DQB2P05538 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
HLA-DQB2P05538 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 PCDHA1-201ENST00000378133 2726 ntBASIC16.62■□□□□ 0.25
HLA-DQB2P05538 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 AC142381.1-201ENST00000426099 345 ntBASIC16.62■□□□□ 0.25
HLA-DQB2P05538 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 LINC01225-203ENST00000563550 1244 ntBASIC16.62■□□□□ 0.25
HLA-DQB2P05538 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 MIR3687-2-201ENST00000577708 61 ntBASIC16.62■□□□□ 0.25
HLA-DQB2P05538 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 MIR3687-1-201ENST00000614492 61 ntBASIC16.62■□□□□ 0.25
HLA-DQB2P05538 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.62■□□□□ 0.25
HLA-DQB2P05538 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms