Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 GXYLT1P3-201ENST00000453058 1193 ntBASIC12.41□□□□□ -0.42
HLA-DQA1P01909 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 AC092338.2-201ENST00000568827 1415 ntBASIC12.41□□□□□ -0.42
HLA-DQA1P01909 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 GXYLT1P4-201ENST00000613576 1192 ntBASIC12.41□□□□□ -0.42
HLA-DQA1P01909 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 AC010947.1-201ENST00000623454 693 ntBASIC12.41□□□□□ -0.42
HLA-DQA1P01909 AC133561.5-201ENST00000635547 218 ntBASIC12.41□□□□□ -0.42
HLA-DQA1P01909 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC12.41□□□□□ -0.42
HLA-DQA1P01909 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 KRT18P22-201ENST00000402024 1347 ntBASIC12.4□□□□□ -0.42
HLA-DQA1P01909 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 PGR-210ENST00000619228 3038 ntTSL 5 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 LIN28AP1-201ENST00000429574 405 ntBASIC12.4□□□□□ -0.42
HLA-DQA1P01909 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 ATP5G1P1-201ENST00000448724 379 ntBASIC12.4□□□□□ -0.42
HLA-DQA1P01909 PON3-205ENST00000451904 1053 ntTSL 3 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 TMA16-209ENST00000513272 803 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 AC111152.3-201ENST00000569699 673 ntBASIC12.4□□□□□ -0.42
HLA-DQA1P01909 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 AC024563.2-201ENST00000603282 481 ntBASIC12.4□□□□□ -0.42
HLA-DQA1P01909 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 AC010653.2-201ENST00000623505 997 ntBASIC12.4□□□□□ -0.42
HLA-DQA1P01909 AC073912.3-201ENST00000624414 853 ntBASIC12.4□□□□□ -0.42
HLA-DQA1P01909 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 FBXO42-201ENST00000375592 6202 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.42
HLA-DQA1P01909 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.4□□□□□ -0.43
HLA-DQA1P01909 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
HLA-DQA1P01909 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC12.4□□□□□ -0.43
HLA-DQA1P01909 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 AC007191.1-201ENST00000623179 2995 ntBASIC12.39□□□□□ -0.43
HLA-DQA1P01909 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 AL135999.2-201ENST00000622438 1686 ntBASIC12.39□□□□□ -0.43
HLA-DQA1P01909 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.39□□□□□ -0.43
HLA-DQA1P01909 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52.2 ms