Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC17.93■□□□□ 0.46
CLDN3O15551 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.93■□□□□ 0.46
CLDN3O15551 FHL2-212ENST00000607522 759 ntTSL 2 BASIC17.93■□□□□ 0.46
CLDN3O15551 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.93■□□□□ 0.46
CLDN3O15551 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.93■□□□□ 0.46
CLDN3O15551 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.93■□□□□ 0.46
CLDN3O15551 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
CLDN3O15551 ALOX12P2-203ENST00000570921 1945 ntBASIC17.93■□□□□ 0.46
CLDN3O15551 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC17.93■□□□□ 0.46
CLDN3O15551 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC17.93■□□□□ 0.46
CLDN3O15551 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC17.93■□□□□ 0.46
CLDN3O15551 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
CLDN3O15551 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
CLDN3O15551 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.93■□□□□ 0.46
CLDN3O15551 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
CLDN3O15551 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC17.93■□□□□ 0.46
CLDN3O15551 FOXO1B-201ENST00000504678 1527 ntBASIC17.93■□□□□ 0.46
CLDN3O15551 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN3O15551 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.92■□□□□ 0.46
CLDN3O15551 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN3O15551 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN3O15551 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN3O15551 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.92■□□□□ 0.46
CLDN3O15551 PMS2P2-201ENST00000425039 1128 ntBASIC17.92■□□□□ 0.46
CLDN3O15551 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.92■□□□□ 0.46
CLDN3O15551 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.92■□□□□ 0.46
CLDN3O15551 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC17.92■□□□□ 0.46
CLDN3O15551 AC098859.1-201ENST00000502915 1238 ntBASIC17.92■□□□□ 0.46
CLDN3O15551 AC109322.1-201ENST00000524499 1264 ntBASIC17.92■□□□□ 0.46
CLDN3O15551 ALG1L8P-201ENST00000533887 760 ntBASIC17.92■□□□□ 0.46
CLDN3O15551 AC025678.2-201ENST00000562061 970 ntBASIC17.92■□□□□ 0.46
CLDN3O15551 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.92■□□□□ 0.46
CLDN3O15551 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
CLDN3O15551 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.92■□□□□ 0.46
CLDN3O15551 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN3O15551 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC17.92■□□□□ 0.46
CLDN3O15551 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.92■□□□□ 0.46
CLDN3O15551 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC17.92■□□□□ 0.46
CLDN3O15551 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN3O15551 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN3O15551 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.92■□□□□ 0.46
CLDN3O15551 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC17.92■□□□□ 0.46
CLDN3O15551 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
CLDN3O15551 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.91■□□□□ 0.46
CLDN3O15551 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CLDN3O15551 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.91■□□□□ 0.46
CLDN3O15551 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.91■□□□□ 0.46
CLDN3O15551 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 AC005052.1-201ENST00000625181 2492 ntBASIC17.91■□□□□ 0.46
CLDN3O15551 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
CLDN3O15551 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
CLDN3O15551 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
CLDN3O15551 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
CLDN3O15551 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC17.91■□□□□ 0.46
CLDN3O15551 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 AP001059.3-201ENST00000619053 235 ntBASIC17.91■□□□□ 0.46
CLDN3O15551 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC17.91■□□□□ 0.46
CLDN3O15551 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC17.91■□□□□ 0.46
CLDN3O15551 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
CLDN3O15551 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
CLDN3O15551 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.91■□□□□ 0.46
CLDN3O15551 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms