Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 AL645939.2-201ENST00000427340 991 ntBASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 AC109322.1-201ENST00000524499 1264 ntBASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 RFPL4AP1-201ENST00000530883 850 ntBASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 KRT8P23-201ENST00000560090 1207 ntBASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 AC004449.1-201ENST00000564240 433 ntBASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 LINC00628-201ENST00000628516 1289 ntBASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL4A3BPQ9Y5P4 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 FAM58DP-201ENST00000428076 619 ntBASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 AC008267.7-201ENST00000624570 1194 ntBASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
COL4A3BPQ9Y5P4 AC005052.1-201ENST00000625181 2492 ntBASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 UXT-AS1-201ENST00000590504 1525 ntBASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 AC027307.2-201ENST00000591252 911 ntBASIC18.35■□□□□ 0.53
COL4A3BPQ9Y5P4 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC18.35■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms