Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 CRYGEP-201ENST00000412192 528 ntBASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 HCG4B-203ENST00000450128 991 ntBASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 AL450487.1-201ENST00000426799 995 ntBASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LIMCH1Q9UPQ0 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 MRPL3P1-201ENST00000400109 1033 ntBASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 IGHV3-22-201ENST00000520721 359 ntBASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 AC092919.2-201ENST00000623631 1645 ntBASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC19.35■□□□□ 0.69
LIMCH1Q9UPQ0 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 RHOQP3-201ENST00000437982 621 ntBASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 RNA5SP415-201ENST00000517246 115 ntBASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 AC096734.2-201ENST00000562054 433 ntBASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.34■□□□□ 0.69
LIMCH1Q9UPQ0 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms