Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AL109954.1-202ENST00000564051 2148 ntBASIC16.23■□□□□ 0.19
MKS1Q9NXB0 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 AC087388.1-201ENST00000571370 1112 ntBASIC16.23■□□□□ 0.19
MKS1Q9NXB0 AC008608.2-201ENST00000606089 416 ntBASIC16.23■□□□□ 0.19
MKS1Q9NXB0 AC091076.1-201ENST00000610741 619 ntBASIC16.23■□□□□ 0.19
MKS1Q9NXB0 AC107918.4-202ENST00000641623 219 ntBASIC16.23■□□□□ 0.19
MKS1Q9NXB0 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 AC012569.1-201ENST00000591191 1524 ntBASIC16.23■□□□□ 0.19
MKS1Q9NXB0 AC011477.6-201ENST00000604980 1927 ntBASIC16.23■□□□□ 0.19
MKS1Q9NXB0 AC136621.1-201ENST00000624017 2304 ntBASIC16.23■□□□□ 0.19
MKS1Q9NXB0 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
MKS1Q9NXB0 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 CD99-202ENST00000381180 530 ntTSL 2 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 SCARNA2-201ENST00000458748 420 ntBASIC16.22■□□□□ 0.19
MKS1Q9NXB0 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 FOSL1P1-201ENST00000511041 816 ntBASIC16.22■□□□□ 0.19
MKS1Q9NXB0 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.22■□□□□ 0.19
MKS1Q9NXB0 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 RNU1-129P-201ENST00000384064 167 ntBASIC16.21■□□□□ 0.19
MKS1Q9NXB0 AC073621.1-201ENST00000392730 636 ntBASIC16.21■□□□□ 0.19
MKS1Q9NXB0 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 U1.21-201ENST00000580816 167 ntBASIC16.21■□□□□ 0.19
MKS1Q9NXB0 AC008667.4-201ENST00000607370 168 ntBASIC16.21■□□□□ 0.19
MKS1Q9NXB0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
MKS1Q9NXB0 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
MKS1Q9NXB0 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
MKS1Q9NXB0 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
MKS1Q9NXB0 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.21■□□□□ 0.18
MKS1Q9NXB0 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
MKS1Q9NXB0 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
MKS1Q9NXB0 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
MKS1Q9NXB0 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.2■□□□□ 0.18
MKS1Q9NXB0 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms