Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.34■□□□□ 0.21
TRIM39Q9HCM9 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM39Q9HCM9 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM39Q9HCM9 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.21
TRIM39Q9HCM9 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRIM39Q9HCM9 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
TRIM39Q9HCM9 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 MST1L-201ENST00000442552 2185 ntBASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 AL138918.1-201ENST00000568306 659 ntBASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 AGGF1P2-201ENST00000426656 2106 ntBASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC16.33■□□□□ 0.2
TRIM39Q9HCM9 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 AL627223.1-201ENST00000416693 442 ntBASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 AC069335.1-201ENST00000489972 472 ntBASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 AC093520.2-201ENST00000561830 333 ntBASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 FLJ38576-201ENST00000623820 2459 ntBASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 AC084121.4-201ENST00000641598 221 ntBASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 AF228730.8-201ENST00000642140 221 ntBASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 UBALD1-205ENST00000590891 2641 ntBASIC16.32■□□□□ 0.2
TRIM39Q9HCM9 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 GGT3P-204ENST00000453783 1664 ntBASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
TRIM39Q9HCM9 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms