Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CHMP4AQ9BY43 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 PRORSD1P-202ENST00000563365 2154 ntBASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 AQP6-203ENST00000551733 849 ntTSL 3 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 PAM16-215ENST00000577031 548 ntTSL 4 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 AC073592.8-201ENST00000624126 511 ntBASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CHMP4AQ9BY43 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 CETN4P-206ENST00000642099 2168 ntBASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 DUX4L27-201ENST00000554796 1261 ntBASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CHMP4AQ9BY43 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 AC022211.2-201ENST00000585075 2527 ntBASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
CHMP4AQ9BY43 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CHMP4AQ9BY43 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms