Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 IGHV3-42-201ENST00000520410 361 ntBASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 AC012645.4-201ENST00000610691 1061 ntBASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 AC008761.3-201ENST00000624803 892 ntBASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
RPAP1Q9BWH6 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC19.89■□□□□ 0.78
RPAP1Q9BWH6 AC005052.1-201ENST00000625181 2492 ntBASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 FRMD6-AS1-201ENST00000617151 2229 ntBASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.89■□□□□ 0.77
RPAP1Q9BWH6 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 AC079328.2-201ENST00000561241 3354 ntBASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 METTL26-204ENST00000397665 558 ntTSL 2 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 AC097493.3-201ENST00000509725 367 ntBASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 AC105233.2-201ENST00000523697 349 ntBASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 AF228730.5-201ENST00000530288 346 ntBASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 AC073389.1-201ENST00000595595 795 ntBASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 AL162727.3-201ENST00000635661 2787 ntBASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.88■□□□□ 0.77
RPAP1Q9BWH6 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms