Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 AC020765.3-201ENST00000613051 740 ntBASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 AC005622.1-201ENST00000636801 1703 ntBASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.07■□□□□ 0.32
ATG4AQ8WYN0 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 MRPL20P1-201ENST00000400819 433 ntBASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 KRT18P56-201ENST00000507275 550 ntBASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
ATG4AQ8WYN0 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 AC069224.1-201ENST00000566372 1715 ntBASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 AC117500.6-201ENST00000624871 588 ntBASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 AC005593.1-201ENST00000624894 515 ntBASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 FES-204ENST00000414248 2327 ntTSL 2 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC17.05■□□□□ 0.32
ATG4AQ8WYN0 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms