Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 ARL16-202ENST00000570561 768 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HMGB4Q8WW32 EML3-212ENST00000494176 2901 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 AL512652.2-201ENST00000625156 1716 ntBASIC16.42■□□□□ 0.22
HMGB4Q8WW32 CROCCP1-201ENST00000426910 5675 ntBASIC16.42■□□□□ 0.22
HMGB4Q8WW32 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 AL589702.1-201ENST00000641229 1509 ntBASIC16.42■□□□□ 0.22
HMGB4Q8WW32 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 ARSEP1-201ENST00000420443 635 ntBASIC16.42■□□□□ 0.22
HMGB4Q8WW32 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 U91328.1-201ENST00000437528 223 ntBASIC16.42■□□□□ 0.22
HMGB4Q8WW32 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 INE1-201ENST00000456273 945 ntBASIC16.42■□□□□ 0.22
HMGB4Q8WW32 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 AC008494.3-201ENST00000606615 944 ntBASIC16.42■□□□□ 0.22
HMGB4Q8WW32 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
HMGB4Q8WW32 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 AL391825.1-201ENST00000457671 1364 ntBASIC16.41■□□□□ 0.22
HMGB4Q8WW32 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.41■□□□□ 0.22
HMGB4Q8WW32 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 GIMAP3P-201ENST00000495150 836 ntBASIC16.41■□□□□ 0.22
HMGB4Q8WW32 AC093004.1-201ENST00000508850 424 ntBASIC16.41■□□□□ 0.22
HMGB4Q8WW32 SPDYE18-201ENST00000510091 1050 ntBASIC16.41■□□□□ 0.22
HMGB4Q8WW32 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 IGHV3-71-201ENST00000523324 359 ntBASIC16.41■□□□□ 0.22
HMGB4Q8WW32 AP002490.2-201ENST00000524791 560 ntBASIC16.41■□□□□ 0.22
HMGB4Q8WW32 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 AC026979.3-201ENST00000607315 403 ntBASIC16.41■□□□□ 0.22
HMGB4Q8WW32 AC004790.1-201ENST00000612686 536 ntBASIC16.41■□□□□ 0.22
HMGB4Q8WW32 AC020765.3-201ENST00000613051 740 ntBASIC16.41■□□□□ 0.22
HMGB4Q8WW32 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 MIR6752-201ENST00000618442 71 ntBASIC16.41■□□□□ 0.22
HMGB4Q8WW32 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.41■□□□□ 0.22
HMGB4Q8WW32 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms