Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 AC211486.1-202ENST00000416371 468 ntBASIC16.05■□□□□ 0.16
VRK3Q8IV63 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 AL592309.1-201ENST00000443127 649 ntBASIC16.05■□□□□ 0.16
VRK3Q8IV63 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 AC211476.1-201ENST00000503899 468 ntBASIC16.05■□□□□ 0.16
VRK3Q8IV63 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 NKG7-205ENST00000600427 520 ntTSL 3 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 FHL2-212ENST00000607522 759 ntTSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 AC134684.3-201ENST00000641758 218 ntBASIC16.05■□□□□ 0.16
VRK3Q8IV63 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.05■□□□□ 0.16
VRK3Q8IV63 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VRK3Q8IV63 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 AC142381.1-201ENST00000426099 345 ntBASIC16.04■□□□□ 0.16
VRK3Q8IV63 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 AC093520.2-201ENST00000561830 333 ntBASIC16.04■□□□□ 0.16
VRK3Q8IV63 SSH2-211ENST00000590153 570 ntTSL 4 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VRK3Q8IV63 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 AL589702.1-201ENST00000641229 1509 ntBASIC16.04■□□□□ 0.16
VRK3Q8IV63 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
VRK3Q8IV63 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.04■□□□□ 0.16
VRK3Q8IV63 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 AL391005.1-201ENST00000623953 2435 ntBASIC16.03■□□□□ 0.16
VRK3Q8IV63 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
VRK3Q8IV63 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.03■□□□□ 0.16
VRK3Q8IV63 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms