Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 TEX30-203ENST00000376022 828 ntTSL 2 BASIC21.44■■□□□ 1.02
USP54Q70EL1 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
USP54Q70EL1 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC21.44■■□□□ 1.02
USP54Q70EL1 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC21.44■■□□□ 1.02
USP54Q70EL1 AC092658.1-201ENST00000505836 891 ntBASIC21.44■■□□□ 1.02
USP54Q70EL1 AL359711.2-201ENST00000563105 872 ntBASIC21.44■■□□□ 1.02
USP54Q70EL1 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC21.44■■□□□ 1.02
USP54Q70EL1 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
USP54Q70EL1 TECR-220ENST00000600083 1204 ntTSL 2 BASIC21.44■■□□□ 1.02
USP54Q70EL1 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC21.44■■□□□ 1.02
USP54Q70EL1 AL450472.2-201ENST00000603663 1156 ntBASIC21.44■■□□□ 1.02
USP54Q70EL1 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC21.44■■□□□ 1.02
USP54Q70EL1 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC21.44■■□□□ 1.02
USP54Q70EL1 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
USP54Q70EL1 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
USP54Q70EL1 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
USP54Q70EL1 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
USP54Q70EL1 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC21.43■■□□□ 1.02
USP54Q70EL1 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
USP54Q70EL1 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC21.43■■□□□ 1.02
USP54Q70EL1 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC21.43■■□□□ 1.02
USP54Q70EL1 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
USP54Q70EL1 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
USP54Q70EL1 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC21.43■■□□□ 1.02
USP54Q70EL1 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
USP54Q70EL1 APOA1-205ENST00000375329 927 ntTSL 2 BASIC21.43■■□□□ 1.02
USP54Q70EL1 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
USP54Q70EL1 AC012441.1-201ENST00000446669 685 ntBASIC21.43■■□□□ 1.02
USP54Q70EL1 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
USP54Q70EL1 MIR4525-201ENST00000580000 75 ntBASIC21.43■■□□□ 1.02
USP54Q70EL1 KRT8P22-201ENST00000562317 1415 ntBASIC21.43■■□□□ 1.02
USP54Q70EL1 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
USP54Q70EL1 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC21.42■■□□□ 1.02
USP54Q70EL1 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
USP54Q70EL1 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 AC134407.2-201ENST00000625089 1978 ntBASIC21.42■■□□□ 1.02
USP54Q70EL1 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC21.42■■□□□ 1.02
USP54Q70EL1 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC21.42■■□□□ 1.02
USP54Q70EL1 FTH1P14-201ENST00000482930 551 ntBASIC21.42■■□□□ 1.02
USP54Q70EL1 HNRNPA1P13-201ENST00000510646 963 ntBASIC21.42■■□□□ 1.02
USP54Q70EL1 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC21.42■■□□□ 1.02
USP54Q70EL1 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
USP54Q70EL1 AC015910.1-201ENST00000579400 975 ntBASIC21.42■■□□□ 1.02
USP54Q70EL1 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC21.42■■□□□ 1.02
USP54Q70EL1 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC21.42■■□□□ 1.02
USP54Q70EL1 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC21.42■■□□□ 1.02
USP54Q70EL1 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC21.42■■□□□ 1.02
USP54Q70EL1 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC21.42■■□□□ 1.02
USP54Q70EL1 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
USP54Q70EL1 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC21.41■■□□□ 1.02
USP54Q70EL1 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
USP54Q70EL1 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
USP54Q70EL1 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
USP54Q70EL1 HAUS4P1-201ENST00000406739 1145 ntBASIC21.41■■□□□ 1.02
USP54Q70EL1 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
USP54Q70EL1 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
USP54Q70EL1 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC21.41■■□□□ 1.02
USP54Q70EL1 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC21.41■■□□□ 1.02
USP54Q70EL1 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC21.41■■□□□ 1.02
USP54Q70EL1 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC21.41■■□□□ 1.02
USP54Q70EL1 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
USP54Q70EL1 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC21.41■■□□□ 1.02
USP54Q70EL1 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC21.41■■□□□ 1.02
USP54Q70EL1 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC21.41■■□□□ 1.02
USP54Q70EL1 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
USP54Q70EL1 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.41■■□□□ 1.02
USP54Q70EL1 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
USP54Q70EL1 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
USP54Q70EL1 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
USP54Q70EL1 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
USP54Q70EL1 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
USP54Q70EL1 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC21.41■■□□□ 1.02
USP54Q70EL1 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC21.4■■□□□ 1.02
USP54Q70EL1 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
USP54Q70EL1 ACTG1P3-201ENST00000431775 1114 ntBASIC21.4■■□□□ 1.02
USP54Q70EL1 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
USP54Q70EL1 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
USP54Q70EL1 PHKG1P2-201ENST00000457537 863 ntBASIC21.4■■□□□ 1.02
USP54Q70EL1 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC21.4■■□□□ 1.02
USP54Q70EL1 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC21.4■■□□□ 1.02
USP54Q70EL1 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC21.4■■□□□ 1.02
USP54Q70EL1 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC21.4■■□□□ 1.02
USP54Q70EL1 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC21.4■■□□□ 1.02
USP54Q70EL1 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC21.4■■□□□ 1.02
USP54Q70EL1 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
USP54Q70EL1 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
USP54Q70EL1 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC21.4■■□□□ 1.02
USP54Q70EL1 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms