Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 AC006058.4-201ENST00000624016 1670 ntBASIC14.78□□□□□ -0.04
CCDC58Q4VC31 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 GID4-202ENST00000376345 1391 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 BX276092.5-203ENST00000456199 560 ntBASIC14.78□□□□□ -0.04
CCDC58Q4VC31 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 CDV3-207ENST00000508481 661 ntTSL 3 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 Z69720.1-201ENST00000601483 472 ntBASIC14.78□□□□□ -0.04
CCDC58Q4VC31 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
CCDC58Q4VC31 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.77□□□□□ -0.04
CCDC58Q4VC31 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.77□□□□□ -0.04
CCDC58Q4VC31 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC58Q4VC31 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC14.77□□□□□ -0.04
CCDC58Q4VC31 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC58Q4VC31 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.77□□□□□ -0.04
CCDC58Q4VC31 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC58Q4VC31 AC233702.3-201ENST00000578656 1387 ntBASIC14.77□□□□□ -0.04
CCDC58Q4VC31 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
CCDC58Q4VC31 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
CCDC58Q4VC31 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.77□□□□□ -0.04
CCDC58Q4VC31 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 AC104076.2-201ENST00000448912 469 ntBASIC14.77□□□□□ -0.05
CCDC58Q4VC31 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 MINOS1P3-201ENST00000457048 203 ntBASIC14.77□□□□□ -0.05
CCDC58Q4VC31 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
CCDC58Q4VC31 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 AL590787.1-201ENST00000568856 1315 ntBASIC14.76□□□□□ -0.05
CCDC58Q4VC31 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
CCDC58Q4VC31 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 58.9 ms