Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
MSH6P52701 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 BAATP1-201ENST00000412284 1225 ntBASIC22.43■■□□□ 1.18
MSH6P52701 AC012441.1-201ENST00000446669 685 ntBASIC22.43■■□□□ 1.18
MSH6P52701 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC22.43■■□□□ 1.18
MSH6P52701 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC22.43■■□□□ 1.18
MSH6P52701 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC22.43■■□□□ 1.18
MSH6P52701 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 AC105129.2-201ENST00000559536 390 ntBASIC22.43■■□□□ 1.18
MSH6P52701 AC009486.1-201ENST00000569860 813 ntBASIC22.43■■□□□ 1.18
MSH6P52701 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC22.43■■□□□ 1.18
MSH6P52701 NAT9-224ENST00000583757 583 ntTSL 3 BASIC22.43■■□□□ 1.18
MSH6P52701 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC22.43■■□□□ 1.18
MSH6P52701 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
MSH6P52701 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC22.43■■□□□ 1.18
MSH6P52701 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
MSH6P52701 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
MSH6P52701 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC22.43■■□□□ 1.18
MSH6P52701 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC22.43■■□□□ 1.18
MSH6P52701 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
MSH6P52701 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC22.42■■□□□ 1.18
MSH6P52701 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH6P52701 PKIG-203ENST00000372887 769 ntTSL 3 BASIC22.42■■□□□ 1.18
MSH6P52701 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC22.42■■□□□ 1.18
MSH6P52701 AC134915.1-201ENST00000426461 574 ntBASIC22.42■■□□□ 1.18
MSH6P52701 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
MSH6P52701 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC22.42■■□□□ 1.18
MSH6P52701 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH6P52701 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH6P52701 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH6P52701 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH6P52701 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC22.42■■□□□ 1.18
MSH6P52701 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH6P52701 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH6P52701 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH6P52701 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC22.42■■□□□ 1.18
MSH6P52701 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC22.42■■□□□ 1.18
MSH6P52701 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
MSH6P52701 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
MSH6P52701 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
MSH6P52701 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
MSH6P52701 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC22.41■■□□□ 1.18
MSH6P52701 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC22.41■■□□□ 1.18
MSH6P52701 RPL13P2-201ENST00000440687 659 ntBASIC22.41■■□□□ 1.18
MSH6P52701 AC104306.2-201ENST00000451877 341 ntBASIC22.41■■□□□ 1.18
MSH6P52701 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC22.41■■□□□ 1.18
MSH6P52701 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC22.41■■□□□ 1.18
MSH6P52701 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC22.41■■□□□ 1.18
MSH6P52701 PRKN-211ENST00000615065 261 ntTSL 5 BASIC22.41■■□□□ 1.18
MSH6P52701 AL136982.4-201ENST00000437689 1740 ntBASIC22.41■■□□□ 1.18
MSH6P52701 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC22.41■■□□□ 1.18
MSH6P52701 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC22.41■■□□□ 1.18
MSH6P52701 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
MSH6P52701 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC22.4■■□□□ 1.18
MSH6P52701 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH6P52701 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
MSH6P52701 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
MSH6P52701 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH6P52701 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH6P52701 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC22.4■■□□□ 1.18
MSH6P52701 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC22.4■■□□□ 1.18
MSH6P52701 FXR1-221ENST00000491674 365 ntTSL 2 BASIC22.4■■□□□ 1.18
MSH6P52701 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC22.4■■□□□ 1.18
MSH6P52701 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH6P52701 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC22.4■■□□□ 1.18
MSH6P52701 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC22.4■■□□□ 1.18
MSH6P52701 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC22.4■■□□□ 1.18
MSH6P52701 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC22.4■■□□□ 1.18
MSH6P52701 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC22.4■■□□□ 1.18
MSH6P52701 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH6P52701 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
MSH6P52701 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC22.4■■□□□ 1.18
MSH6P52701 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC22.4■■□□□ 1.18
MSH6P52701 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC22.4■■□□□ 1.18
MSH6P52701 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH6P52701 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
MSH6P52701 AL607033.1-201ENST00000623900 1599 ntBASIC22.4■■□□□ 1.18
MSH6P52701 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
MSH6P52701 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
MSH6P52701 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
MSH6P52701 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms