Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 CICP13-201ENST00000422015 2789 ntBASIC17.39■□□□□ 0.37
LIG3P49916 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.39■□□□□ 0.37
LIG3P49916 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.39■□□□□ 0.37
LIG3P49916 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.39■□□□□ 0.37
LIG3P49916 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.39■□□□□ 0.37
LIG3P49916 AC098831.1-202ENST00000438821 336 ntBASIC17.39■□□□□ 0.37
LIG3P49916 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC17.39■□□□□ 0.37
LIG3P49916 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC17.39■□□□□ 0.37
LIG3P49916 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.39■□□□□ 0.37
LIG3P49916 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC17.39■□□□□ 0.37
LIG3P49916 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LIG3P49916 AF228730.7-201ENST00000641842 219 ntBASIC17.39■□□□□ 0.37
LIG3P49916 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
LIG3P49916 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIG3P49916 AC046185.3-201ENST00000623228 1824 ntBASIC17.39■□□□□ 0.37
LIG3P49916 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIG3P49916 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
LIG3P49916 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIG3P49916 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIG3P49916 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIG3P49916 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIG3P49916 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIG3P49916 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LIG3P49916 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.38■□□□□ 0.37
LIG3P49916 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
LIG3P49916 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.38■□□□□ 0.37
LIG3P49916 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LIG3P49916 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.38■□□□□ 0.37
LIG3P49916 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.38■□□□□ 0.37
LIG3P49916 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.38■□□□□ 0.37
LIG3P49916 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.38■□□□□ 0.37
LIG3P49916 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC17.38■□□□□ 0.37
LIG3P49916 KRT18P27-201ENST00000427733 1299 ntBASIC17.38■□□□□ 0.37
LIG3P49916 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 RPL13AP23-201ENST00000480739 586 ntBASIC17.38■□□□□ 0.37
LIG3P49916 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.38■□□□□ 0.37
LIG3P49916 IGHV3-22-201ENST00000520721 359 ntBASIC17.38■□□□□ 0.37
LIG3P49916 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.38■□□□□ 0.37
LIG3P49916 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.38■□□□□ 0.37
LIG3P49916 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.38■□□□□ 0.37
LIG3P49916 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.38■□□□□ 0.37
LIG3P49916 AC004706.3-202ENST00000621574 984 ntBASIC17.38■□□□□ 0.37
LIG3P49916 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC17.38■□□□□ 0.37
LIG3P49916 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.38■□□□□ 0.37
LIG3P49916 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
LIG3P49916 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC17.38■□□□□ 0.37
LIG3P49916 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.38■□□□□ 0.37
LIG3P49916 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.38■□□□□ 0.37
LIG3P49916 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC17.38■□□□□ 0.37
LIG3P49916 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LIG3P49916 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LIG3P49916 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC17.37■□□□□ 0.37
LIG3P49916 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC17.37■□□□□ 0.37
LIG3P49916 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.37■□□□□ 0.37
LIG3P49916 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
LIG3P49916 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
LIG3P49916 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC17.37■□□□□ 0.37
LIG3P49916 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.37■□□□□ 0.37
LIG3P49916 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.37■□□□□ 0.37
LIG3P49916 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.37■□□□□ 0.37
LIG3P49916 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 AC073621.1-201ENST00000392730 636 ntBASIC17.37■□□□□ 0.37
LIG3P49916 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.37■□□□□ 0.37
LIG3P49916 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.37■□□□□ 0.37
LIG3P49916 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC17.37■□□□□ 0.37
LIG3P49916 AL356488.2-201ENST00000602755 427 ntBASIC17.37■□□□□ 0.37
LIG3P49916 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
LIG3P49916 OVCH1-AS1-204ENST00000641955 5529 ntBASIC17.37■□□□□ 0.37
LIG3P49916 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
LIG3P49916 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LIG3P49916 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
LIG3P49916 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms