Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 THSD4-201ENST00000261862 3133 ntTSL 5 BASIC13.74□□□□□ -0.21
HOXA1P49639 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 FRMD8P1-201ENST00000440433 1524 ntBASIC13.74□□□□□ -0.21
HOXA1P49639 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC13.74□□□□□ -0.21
HOXA1P49639 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
HOXA1P49639 AL353593.2-201ENST00000602529 1483 ntBASIC13.74□□□□□ -0.21
HOXA1P49639 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.73□□□□□ -0.21
HOXA1P49639 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC13.73□□□□□ -0.21
HOXA1P49639 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 TUBB8P12-201ENST00000308911 1335 ntBASIC13.73□□□□□ -0.21
HOXA1P49639 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 TUBB7P-202ENST00000428444 1305 ntBASIC13.73□□□□□ -0.21
HOXA1P49639 TUBB8P7-204ENST00000567960 1332 ntBASIC13.73□□□□□ -0.21
HOXA1P49639 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 SPDYE13P-201ENST00000445314 798 ntBASIC13.73□□□□□ -0.21
HOXA1P49639 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.73□□□□□ -0.21
HOXA1P49639 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 AC009533.2-201ENST00000543664 586 ntBASIC13.73□□□□□ -0.21
HOXA1P49639 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC13.73□□□□□ -0.21
HOXA1P49639 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC13.73□□□□□ -0.21
HOXA1P49639 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC13.73□□□□□ -0.21
HOXA1P49639 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC13.73□□□□□ -0.21
HOXA1P49639 MARS-233ENST00000628866 2583 ntTSL 5 BASIC13.73□□□□□ -0.21
HOXA1P49639 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
HOXA1P49639 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.73□□□□□ -0.21
HOXA1P49639 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC13.72□□□□□ -0.21
HOXA1P49639 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC13.72□□□□□ -0.21
HOXA1P49639 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC13.72□□□□□ -0.21
HOXA1P49639 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
HOXA1P49639 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC13.72□□□□□ -0.21
HOXA1P49639 TRAPPC8-201ENST00000283351 6226 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC13.72□□□□□ -0.21
HOXA1P49639 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.72□□□□□ -0.21
HOXA1P49639 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC13.72□□□□□ -0.21
HOXA1P49639 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC13.72□□□□□ -0.21
HOXA1P49639 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
HOXA1P49639 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 AC007292.2-201ENST00000593524 1812 ntBASIC13.72□□□□□ -0.21
HOXA1P49639 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC13.72□□□□□ -0.21
HOXA1P49639 RN7SL606P-201ENST00000472779 293 ntBASIC13.72□□□□□ -0.21
HOXA1P49639 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC13.72□□□□□ -0.21
HOXA1P49639 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC13.72□□□□□ -0.21
HOXA1P49639 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC13.72□□□□□ -0.21
HOXA1P49639 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC13.72□□□□□ -0.21
HOXA1P49639 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC13.72□□□□□ -0.21
HOXA1P49639 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC13.72□□□□□ -0.21
HOXA1P49639 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 AC007686.3-201ENST00000619017 3487 ntBASIC13.72□□□□□ -0.21
HOXA1P49639 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC13.72□□□□□ -0.21
HOXA1P49639 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.72□□□□□ -0.21
HOXA1P49639 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC13.72□□□□□ -0.21
HOXA1P49639 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
HOXA1P49639 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms