Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 AL022342.1-201ENST00000400363 863 ntBASIC12.6□□□□□ -0.39
HLA-DMBP28068 RAB17-203ENST00000409576 466 ntTSL 3 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 AL590627.1-203ENST00000421194 1026 ntBASIC12.6□□□□□ -0.39
HLA-DMBP28068 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 AC120114.3-201ENST00000611923 658 ntBASIC12.6□□□□□ -0.39
HLA-DMBP28068 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC12.6□□□□□ -0.39
HLA-DMBP28068 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HLA-DMBP28068 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 REXO1L8P-201ENST00000604378 1897 ntBASIC12.59□□□□□ -0.39
HLA-DMBP28068 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 RPS2P1-201ENST00000434010 821 ntBASIC12.59□□□□□ -0.39
HLA-DMBP28068 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 PNMT-203ENST00000581428 677 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 CYP2A7P1-201ENST00000595391 815 ntBASIC12.59□□□□□ -0.39
HLA-DMBP28068 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 AC148477.8-201ENST00000624298 468 ntBASIC12.59□□□□□ -0.39
HLA-DMBP28068 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 AF228730.7-201ENST00000641842 219 ntBASIC12.59□□□□□ -0.39
HLA-DMBP28068 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 AC105917.1-201ENST00000506637 2539 ntBASIC12.59□□□□□ -0.39
HLA-DMBP28068 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC12.59□□□□□ -0.39
HLA-DMBP28068 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
HLA-DMBP28068 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms