Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.18■□□□□ 0.18
CDH3P22223 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
CDH3P22223 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC16.18■□□□□ 0.18
CDH3P22223 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CDH3P22223 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CDH3P22223 AC092183.1-201ENST00000469884 875 ntBASIC16.18■□□□□ 0.18
CDH3P22223 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC16.18■□□□□ 0.18
CDH3P22223 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CDH3P22223 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.18■□□□□ 0.18
CDH3P22223 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.18■□□□□ 0.18
CDH3P22223 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.18■□□□□ 0.18
CDH3P22223 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC16.18■□□□□ 0.18
CDH3P22223 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.18■□□□□ 0.18
CDH3P22223 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CDH3P22223 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.18■□□□□ 0.18
CDH3P22223 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.18■□□□□ 0.18
CDH3P22223 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.18■□□□□ 0.18
CDH3P22223 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.18■□□□□ 0.18
CDH3P22223 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CDH3P22223 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CDH3P22223 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CDH3P22223 AC092068.3-201ENST00000587894 2016 ntBASIC16.18■□□□□ 0.18
CDH3P22223 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC16.17■□□□□ 0.18
CDH3P22223 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CDH3P22223 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
CDH3P22223 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CDH3P22223 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CDH3P22223 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.17■□□□□ 0.18
CDH3P22223 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.17■□□□□ 0.18
CDH3P22223 CNN2P11-201ENST00000429351 262 ntBASIC16.17■□□□□ 0.18
CDH3P22223 URGCP-206ENST00000446958 365 ntTSL 2 BASIC16.17■□□□□ 0.18
CDH3P22223 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC16.17■□□□□ 0.18
CDH3P22223 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.17■□□□□ 0.18
CDH3P22223 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.17■□□□□ 0.18
CDH3P22223 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CDH3P22223 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CDH3P22223 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC16.17■□□□□ 0.18
CDH3P22223 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CDH3P22223 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CDH3P22223 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.17■□□□□ 0.18
CDH3P22223 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CDH3P22223 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CDH3P22223 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.17■□□□□ 0.18
CDH3P22223 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.17■□□□□ 0.18
CDH3P22223 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CDH3P22223 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CDH3P22223 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CDH3P22223 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH3P22223 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
CDH3P22223 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
CDH3P22223 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CDH3P22223 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CDH3P22223 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC16.16■□□□□ 0.18
CDH3P22223 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH3P22223 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH3P22223 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH3P22223 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CDH3P22223 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH3P22223 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH3P22223 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH3P22223 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CDH3P22223 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC16.16■□□□□ 0.18
CDH3P22223 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.16■□□□□ 0.18
CDH3P22223 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms