Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 PIGF-202ENST00000306465 1061 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 FAU-202ENST00000434372 533 ntTSL 2 BASIC16.71■□□□□ 0.27
VCANP13611 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.71■□□□□ 0.27
VCANP13611 AC124283.3-201ENST00000570869 594 ntBASIC16.71■□□□□ 0.27
VCANP13611 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.71■□□□□ 0.27
VCANP13611 WT1-AS_6.1-201ENST00000614919 121 ntBASIC16.71■□□□□ 0.27
VCANP13611 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.71■□□□□ 0.27
VCANP13611 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.71■□□□□ 0.27
VCANP13611 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC16.71■□□□□ 0.27
VCANP13611 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC16.71■□□□□ 0.27
VCANP13611 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC16.71■□□□□ 0.27
VCANP13611 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.71■□□□□ 0.27
VCANP13611 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC16.71■□□□□ 0.27
VCANP13611 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.71■□□□□ 0.27
VCANP13611 AP001065.2-201ENST00000617205 644 ntBASIC16.71■□□□□ 0.27
VCANP13611 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VCANP13611 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.71■□□□□ 0.27
VCANP13611 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.71■□□□□ 0.27
VCANP13611 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.71■□□□□ 0.27
VCANP13611 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.71■□□□□ 0.26
VCANP13611 RNA5SP410-201ENST00000516285 106 ntBASIC16.71■□□□□ 0.26
VCANP13611 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.71■□□□□ 0.26
VCANP13611 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.71■□□□□ 0.26
VCANP13611 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC16.71■□□□□ 0.26
VCANP13611 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.71■□□□□ 0.26
VCANP13611 CYGB-203ENST00000589145 788 ntTSL 3 BASIC16.71■□□□□ 0.26
VCANP13611 AC025181.2-201ENST00000606994 802 ntBASIC16.71■□□□□ 0.26
VCANP13611 AC009084.3-201ENST00000623356 437 ntBASIC16.71■□□□□ 0.26
VCANP13611 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
VCANP13611 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC16.7■□□□□ 0.26
VCANP13611 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC16.7■□□□□ 0.26
VCANP13611 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.7■□□□□ 0.26
VCANP13611 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC16.7■□□□□ 0.26
VCANP13611 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC16.7■□□□□ 0.26
VCANP13611 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC16.7■□□□□ 0.26
VCANP13611 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.7■□□□□ 0.26
VCANP13611 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
VCANP13611 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC16.7■□□□□ 0.26
VCANP13611 CLUHP6-201ENST00000580789 941 ntBASIC16.7■□□□□ 0.26
VCANP13611 INTS4P2-202ENST00000614726 2019 ntBASIC16.7■□□□□ 0.26
VCANP13611 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
VCANP13611 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
VCANP13611 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.7■□□□□ 0.26
VCANP13611 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.69■□□□□ 0.26
VCANP13611 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VCANP13611 AP000320.1-201ENST00000440403 471 ntTSL 3 BASIC16.69■□□□□ 0.26
VCANP13611 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC16.69■□□□□ 0.26
VCANP13611 HSPA8-224ENST00000534624 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC16.69■□□□□ 0.26
VCANP13611 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC16.69■□□□□ 0.26
VCANP13611 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VCANP13611 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.69■□□□□ 0.26
VCANP13611 SUPT4H1P2-201ENST00000501248 353 ntBASIC16.69■□□□□ 0.26
VCANP13611 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC16.69■□□□□ 0.26
VCANP13611 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC16.69■□□□□ 0.26
VCANP13611 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC16.69■□□□□ 0.26
VCANP13611 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
VCANP13611 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
VCANP13611 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC16.69■□□□□ 0.26
VCANP13611 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.69■□□□□ 0.26
VCANP13611 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VCANP13611 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms