Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC16.6■□□□□ 0.25
VIMP08670 NKTR-203ENST00000442970 646 ntTSL 2 BASIC16.6■□□□□ 0.25
VIMP08670 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
VIMP08670 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.6■□□□□ 0.25
VIMP08670 MIR4497-201ENST00000583208 89 ntBASIC16.6■□□□□ 0.25
VIMP08670 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.6■□□□□ 0.25
VIMP08670 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 AC136621.1-201ENST00000624017 2304 ntBASIC16.6■□□□□ 0.25
VIMP08670 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC16.6■□□□□ 0.25
VIMP08670 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC16.6■□□□□ 0.25
VIMP08670 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
VIMP08670 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.6■□□□□ 0.25
VIMP08670 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VIMP08670 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.6■□□□□ 0.25
VIMP08670 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.6■□□□□ 0.25
VIMP08670 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.59■□□□□ 0.25
VIMP08670 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
VIMP08670 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.59■□□□□ 0.25
VIMP08670 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VIMP08670 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC16.59■□□□□ 0.25
VIMP08670 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.59■□□□□ 0.25
VIMP08670 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.59■□□□□ 0.25
VIMP08670 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VIMP08670 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC16.59■□□□□ 0.25
VIMP08670 MMP23A-201ENST00000234610 1017 ntBASIC16.59■□□□□ 0.25
VIMP08670 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 MIR662-201ENST00000384847 95 ntBASIC16.59■□□□□ 0.25
VIMP08670 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC16.59■□□□□ 0.25
VIMP08670 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC16.59■□□□□ 0.25
VIMP08670 AC092597.1-201ENST00000487352 616 ntBASIC16.59■□□□□ 0.25
VIMP08670 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC16.59■□□□□ 0.25
VIMP08670 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VIMP08670 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.59■□□□□ 0.25
VIMP08670 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VIMP08670 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.59■□□□□ 0.25
VIMP08670 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.59■□□□□ 0.25
VIMP08670 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.59■□□□□ 0.25
VIMP08670 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.59■□□□□ 0.25
VIMP08670 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
VIMP08670 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.59■□□□□ 0.25
VIMP08670 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VIMP08670 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.59■□□□□ 0.25
VIMP08670 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VIMP08670 AC069224.1-201ENST00000566372 1715 ntBASIC16.59■□□□□ 0.25
VIMP08670 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VIMP08670 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VIMP08670 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
VIMP08670 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VIMP08670 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
VIMP08670 CICP13-201ENST00000422015 2789 ntBASIC16.58■□□□□ 0.25
VIMP08670 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.58■□□□□ 0.24
VIMP08670 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC16.58■□□□□ 0.24
VIMP08670 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.58■□□□□ 0.24
VIMP08670 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.58■□□□□ 0.24
VIMP08670 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
VIMP08670 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.58■□□□□ 0.24
VIMP08670 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.58■□□□□ 0.24
VIMP08670 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC16.58■□□□□ 0.24
VIMP08670 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.58■□□□□ 0.24
VIMP08670 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.58■□□□□ 0.24
VIMP08670 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.58■□□□□ 0.24
VIMP08670 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VIMP08670 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms