Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC22.67■■□□□ 1.22
NPHP4O75161 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC22.67■■□□□ 1.22
NPHP4O75161 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
NPHP4O75161 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC22.67■■□□□ 1.22
NPHP4O75161 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC22.67■■□□□ 1.22
NPHP4O75161 KRTAP10-13P-201ENST00000412914 571 ntBASIC22.67■■□□□ 1.22
NPHP4O75161 PTPA-217ENST00000434095 870 ntTSL 2 BASIC22.67■■□□□ 1.22
NPHP4O75161 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 ELP6-209ENST00000446787 894 ntTSL 3 BASIC22.67■■□□□ 1.22
NPHP4O75161 APOA2-204ENST00000464492 530 ntTSL 3 BASIC22.67■■□□□ 1.22
NPHP4O75161 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC22.67■■□□□ 1.22
NPHP4O75161 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC22.67■■□□□ 1.22
NPHP4O75161 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC22.67■■□□□ 1.22
NPHP4O75161 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC22.67■■□□□ 1.22
NPHP4O75161 AL096828.3-201ENST00000615354 462 ntBASIC22.67■■□□□ 1.22
NPHP4O75161 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC22.67■■□□□ 1.22
NPHP4O75161 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC22.67■■□□□ 1.22
NPHP4O75161 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC22.67■■□□□ 1.22
NPHP4O75161 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
NPHP4O75161 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 COMP-202ENST00000425807 2292 ntTSL 2 BASIC22.67■■□□□ 1.22
NPHP4O75161 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC22.67■■□□□ 1.22
NPHP4O75161 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
NPHP4O75161 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC22.66■■□□□ 1.22
NPHP4O75161 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC22.66■■□□□ 1.22
NPHP4O75161 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
NPHP4O75161 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 GUK1-206ENST00000366723 845 ntTSL 5 BASIC22.66■■□□□ 1.22
NPHP4O75161 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC22.66■■□□□ 1.22
NPHP4O75161 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC22.66■■□□□ 1.22
NPHP4O75161 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC22.66■■□□□ 1.22
NPHP4O75161 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC22.66■■□□□ 1.22
NPHP4O75161 AC104982.3-201ENST00000581995 514 ntBASIC22.66■■□□□ 1.22
NPHP4O75161 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC22.66■■□□□ 1.22
NPHP4O75161 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
NPHP4O75161 REXO1L8P-201ENST00000604378 1897 ntBASIC22.66■■□□□ 1.22
NPHP4O75161 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
NPHP4O75161 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
NPHP4O75161 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC22.66■■□□□ 1.22
NPHP4O75161 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC22.66■■□□□ 1.22
NPHP4O75161 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
NPHP4O75161 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
NPHP4O75161 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP4O75161 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC22.65■■□□□ 1.22
NPHP4O75161 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP4O75161 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC22.65■■□□□ 1.22
NPHP4O75161 AC097724.1-201ENST00000609581 426 ntBASIC22.65■■□□□ 1.22
NPHP4O75161 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
NPHP4O75161 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP4O75161 AL391256.1-201ENST00000443260 1855 ntBASIC22.65■■□□□ 1.22
NPHP4O75161 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC22.65■■□□□ 1.22
NPHP4O75161 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 ZNF815P-201ENST00000421890 1352 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP4O75161 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP4O75161 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC22.65■■□□□ 1.22
NPHP4O75161 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
NPHP4O75161 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC22.65■■□□□ 1.22
NPHP4O75161 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC22.65■■□□□ 1.22
NPHP4O75161 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC22.65■■□□□ 1.22
NPHP4O75161 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
NPHP4O75161 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC22.65■■□□□ 1.22
NPHP4O75161 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
NPHP4O75161 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC22.64■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms