Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHGA3Q9Y5H0 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
PCDHGA3Q9Y5H0 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHGA3Q9Y5H0 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHGA3Q9Y5H0 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
PCDHGA3Q9Y5H0 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHGA3Q9Y5H0 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHGA3Q9Y5H0 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHGA3Q9Y5H0 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
PCDHGA3Q9Y5H0 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHGA3Q9Y5H0 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
PCDHGA3Q9Y5H0 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.95■■□□□ 1.26
PCDHGA3Q9Y5H0 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
PCDHGA3Q9Y5H0 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
PCDHGA3Q9Y5H0 SNAI3-AS1-204ENST00000567997 2048 ntBASIC22.94■■□□□ 1.26
PCDHGA3Q9Y5H0 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC22.94■■□□□ 1.26
PCDHGA3Q9Y5H0 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHGA3Q9Y5H0 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHGA3Q9Y5H0 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22.94■■□□□ 1.26
PCDHGA3Q9Y5H0 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC22.94■■□□□ 1.26
PCDHGA3Q9Y5H0 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.94■■□□□ 1.26
PCDHGA3Q9Y5H0 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.94■■□□□ 1.26
PCDHGA3Q9Y5H0 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
PCDHGA3Q9Y5H0 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
PCDHGA3Q9Y5H0 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
PCDHGA3Q9Y5H0 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC22.93■■□□□ 1.26
PCDHGA3Q9Y5H0 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
PCDHGA3Q9Y5H0 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.93■■□□□ 1.26
PCDHGA3Q9Y5H0 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
PCDHGA3Q9Y5H0 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC22.93■■□□□ 1.26
PCDHGA3Q9Y5H0 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHGA3Q9Y5H0 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
PCDHGA3Q9Y5H0 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
PCDHGA3Q9Y5H0 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC22.92■■□□□ 1.26
PCDHGA3Q9Y5H0 LINC01003-201ENST00000564834 1764 ntBASIC22.91■■□□□ 1.26
PCDHGA3Q9Y5H0 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHGA3Q9Y5H0 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC22.91■■□□□ 1.26
PCDHGA3Q9Y5H0 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC22.91■■□□□ 1.26
PCDHGA3Q9Y5H0 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.91■■□□□ 1.26
PCDHGA3Q9Y5H0 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHGA3Q9Y5H0 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.91■■□□□ 1.26
PCDHGA3Q9Y5H0 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PCDHGA3Q9Y5H0 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
PCDHGA3Q9Y5H0 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
PCDHGA3Q9Y5H0 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC22.9■■□□□ 1.26
PCDHGA3Q9Y5H0 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC22.9■■□□□ 1.26
PCDHGA3Q9Y5H0 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
PCDHGA3Q9Y5H0 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
PCDHGA3Q9Y5H0 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
PCDHGA3Q9Y5H0 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC22.89■■□□□ 1.26
PCDHGA3Q9Y5H0 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.89■■□□□ 1.26
PCDHGA3Q9Y5H0 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
PCDHGA3Q9Y5H0 KRT18P24-201ENST00000344739 1156 ntBASIC22.89■■□□□ 1.25
PCDHGA3Q9Y5H0 MTURN-203ENST00000409688 843 ntTSL 2 BASIC22.89■■□□□ 1.25
PCDHGA3Q9Y5H0 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC22.89■■□□□ 1.25
PCDHGA3Q9Y5H0 CREM-229ENST00000474362 1030 ntTSL 2 BASIC22.89■■□□□ 1.25
PCDHGA3Q9Y5H0 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.25
PCDHGA3Q9Y5H0 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC22.88■■□□□ 1.25
PCDHGA3Q9Y5H0 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC22.88■■□□□ 1.25
PCDHGA3Q9Y5H0 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHGA3Q9Y5H0 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHGA3Q9Y5H0 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC22.88■■□□□ 1.25
PCDHGA3Q9Y5H0 KRT125P-201ENST00000546827 989 ntBASIC22.88■■□□□ 1.25
PCDHGA3Q9Y5H0 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC22.88■■□□□ 1.25
PCDHGA3Q9Y5H0 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHGA3Q9Y5H0 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC22.88■■□□□ 1.25
PCDHGA3Q9Y5H0 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC22.88■■□□□ 1.25
PCDHGA3Q9Y5H0 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA3Q9Y5H0 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA3Q9Y5H0 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA3Q9Y5H0 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA3Q9Y5H0 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA3Q9Y5H0 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA3Q9Y5H0 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA3Q9Y5H0 BX664725.1-201ENST00000438252 379 ntBASIC22.87■■□□□ 1.25
PCDHGA3Q9Y5H0 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA3Q9Y5H0 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA3Q9Y5H0 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA3Q9Y5H0 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.87■■□□□ 1.25
PCDHGA3Q9Y5H0 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC22.86■■□□□ 1.25
PCDHGA3Q9Y5H0 AC091060.1-201ENST00000623524 1766 ntBASIC22.86■■□□□ 1.25
PCDHGA3Q9Y5H0 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC22.86■■□□□ 1.25
PCDHGA3Q9Y5H0 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC22.86■■□□□ 1.25
PCDHGA3Q9Y5H0 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC22.86■■□□□ 1.25
PCDHGA3Q9Y5H0 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
PCDHGA3Q9Y5H0 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
PCDHGA3Q9Y5H0 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
PCDHGA3Q9Y5H0 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC22.86■■□□□ 1.25
PCDHGA3Q9Y5H0 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC22.85■■□□□ 1.25
PCDHGA3Q9Y5H0 AC019069.1-201ENST00000610008 1333 ntBASIC22.85■■□□□ 1.25
PCDHGA3Q9Y5H0 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC22.85■■□□□ 1.25
PCDHGA3Q9Y5H0 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHGA3Q9Y5H0 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHGA3Q9Y5H0 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
PCDHGA3Q9Y5H0 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC22.84■■□□□ 1.25
PCDHGA3Q9Y5H0 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
PCDHGA3Q9Y5H0 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC22.84■■□□□ 1.25
PCDHGA3Q9Y5H0 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
PCDHGA3Q9Y5H0 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
PCDHGA3Q9Y5H0 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms