Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
VSX1Q9NZR4 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
VSX1Q9NZR4 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
VSX1Q9NZR4 AL139125.2-201ENST00000623134 1869 ntBASIC21.15■□□□□ 0.98
VSX1Q9NZR4 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
VSX1Q9NZR4 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX1Q9NZR4 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VSX1Q9NZR4 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
VSX1Q9NZR4 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VSX1Q9NZR4 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VSX1Q9NZR4 AP003733.4-201ENST00000623785 1697 ntBASIC21.14■□□□□ 0.97
VSX1Q9NZR4 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.14■□□□□ 0.97
VSX1Q9NZR4 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VSX1Q9NZR4 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
VSX1Q9NZR4 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VSX1Q9NZR4 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.13■□□□□ 0.97
VSX1Q9NZR4 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
VSX1Q9NZR4 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC21.13■□□□□ 0.97
VSX1Q9NZR4 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VSX1Q9NZR4 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VSX1Q9NZR4 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VSX1Q9NZR4 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
VSX1Q9NZR4 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VSX1Q9NZR4 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VSX1Q9NZR4 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC21.12■□□□□ 0.97
VSX1Q9NZR4 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC21.12■□□□□ 0.97
VSX1Q9NZR4 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
VSX1Q9NZR4 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
VSX1Q9NZR4 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
VSX1Q9NZR4 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VSX1Q9NZR4 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VSX1Q9NZR4 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
VSX1Q9NZR4 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC21.12■□□□□ 0.97
VSX1Q9NZR4 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.11■□□□□ 0.97
VSX1Q9NZR4 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
VSX1Q9NZR4 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VSX1Q9NZR4 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VSX1Q9NZR4 AC026202.3-201ENST00000600805 1127 ntBASIC21.11■□□□□ 0.97
VSX1Q9NZR4 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VSX1Q9NZR4 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
VSX1Q9NZR4 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VSX1Q9NZR4 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
VSX1Q9NZR4 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VSX1Q9NZR4 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VSX1Q9NZR4 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VSX1Q9NZR4 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VSX1Q9NZR4 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
VSX1Q9NZR4 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VSX1Q9NZR4 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VSX1Q9NZR4 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.09■□□□□ 0.97
VSX1Q9NZR4 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.09■□□□□ 0.97
VSX1Q9NZR4 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
VSX1Q9NZR4 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
VSX1Q9NZR4 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21.09■□□□□ 0.97
VSX1Q9NZR4 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VSX1Q9NZR4 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VSX1Q9NZR4 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VSX1Q9NZR4 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VSX1Q9NZR4 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.08■□□□□ 0.97
VSX1Q9NZR4 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VSX1Q9NZR4 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
VSX1Q9NZR4 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
VSX1Q9NZR4 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VSX1Q9NZR4 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VSX1Q9NZR4 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VSX1Q9NZR4 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VSX1Q9NZR4 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
VSX1Q9NZR4 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VSX1Q9NZR4 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VSX1Q9NZR4 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VSX1Q9NZR4 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VSX1Q9NZR4 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.06■□□□□ 0.96
VSX1Q9NZR4 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC21.06■□□□□ 0.96
VSX1Q9NZR4 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VSX1Q9NZR4 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VSX1Q9NZR4 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
VSX1Q9NZR4 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VSX1Q9NZR4 RNF126P1-201ENST00000567452 1320 ntBASIC21.05■□□□□ 0.96
VSX1Q9NZR4 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VSX1Q9NZR4 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VSX1Q9NZR4 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VSX1Q9NZR4 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
VSX1Q9NZR4 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.05■□□□□ 0.96
VSX1Q9NZR4 RPRML-201ENST00000322329 1093 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
VSX1Q9NZR4 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VSX1Q9NZR4 KRT18P10-201ENST00000388836 1287 ntBASIC21.05■□□□□ 0.96
VSX1Q9NZR4 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC21.05■□□□□ 0.96
VSX1Q9NZR4 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC21.05■□□□□ 0.96
VSX1Q9NZR4 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VSX1Q9NZR4 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.04■□□□□ 0.96
VSX1Q9NZR4 HES4-204ENST00000484667 667 ntTSL 3 BASIC21.04■□□□□ 0.96
VSX1Q9NZR4 ABHD17AP3-201ENST00000503096 1137 ntBASIC21.04■□□□□ 0.96
VSX1Q9NZR4 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VSX1Q9NZR4 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
VSX1Q9NZR4 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VSX1Q9NZR4 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VSX1Q9NZR4 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.03■□□□□ 0.96
VSX1Q9NZR4 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VSX1Q9NZR4 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC21.03■□□□□ 0.96
VSX1Q9NZR4 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms