Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC26.73■■□□□ 1.87
UPF3AQ9H1J1 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC26.73■■□□□ 1.87
UPF3AQ9H1J1 AC139426.1-201ENST00000568218 2529 ntBASIC26.72■■□□□ 1.87
UPF3AQ9H1J1 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
UPF3AQ9H1J1 SENP5-202ENST00000419026 973 ntTSL 3 BASIC26.72■■□□□ 1.87
UPF3AQ9H1J1 MIR3621-201ENST00000580529 85 ntBASIC26.72■■□□□ 1.87
UPF3AQ9H1J1 AC010997.5-201ENST00000609182 354 ntBASIC26.72■■□□□ 1.87
UPF3AQ9H1J1 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC26.72■■□□□ 1.87
UPF3AQ9H1J1 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC26.72■■□□□ 1.87
UPF3AQ9H1J1 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC26.71■■□□□ 1.87
UPF3AQ9H1J1 NALT1-201ENST00000429224 738 ntTSL 5 BASIC26.71■■□□□ 1.87
UPF3AQ9H1J1 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC26.71■■□□□ 1.87
UPF3AQ9H1J1 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC26.71■■□□□ 1.87
UPF3AQ9H1J1 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC26.71■■□□□ 1.87
UPF3AQ9H1J1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
UPF3AQ9H1J1 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC26.7■■□□□ 1.87
UPF3AQ9H1J1 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
UPF3AQ9H1J1 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
UPF3AQ9H1J1 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC26.7■■□□□ 1.87
UPF3AQ9H1J1 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC26.7■■□□□ 1.86
UPF3AQ9H1J1 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC26.7■■□□□ 1.86
UPF3AQ9H1J1 MIR6724-1-201ENST00000616420 92 ntBASIC26.7■■□□□ 1.86
UPF3AQ9H1J1 MIR6724-2-201ENST00000616483 92 ntBASIC26.7■■□□□ 1.86
UPF3AQ9H1J1 MIR6724-4-201ENST00000617390 92 ntBASIC26.7■■□□□ 1.86
UPF3AQ9H1J1 MIR6724-3-201ENST00000622482 92 ntBASIC26.7■■□□□ 1.86
UPF3AQ9H1J1 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
UPF3AQ9H1J1 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC26.69■■□□□ 1.86
UPF3AQ9H1J1 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC26.69■■□□□ 1.86
UPF3AQ9H1J1 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
UPF3AQ9H1J1 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
UPF3AQ9H1J1 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC26.69■■□□□ 1.86
UPF3AQ9H1J1 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.69■■□□□ 1.86
UPF3AQ9H1J1 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
UPF3AQ9H1J1 GAK-223ENST00000628912 497 ntTSL 5 BASIC26.69■■□□□ 1.86
UPF3AQ9H1J1 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC26.69■■□□□ 1.86
UPF3AQ9H1J1 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC26.68■■□□□ 1.86
UPF3AQ9H1J1 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
UPF3AQ9H1J1 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
UPF3AQ9H1J1 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26.68■■□□□ 1.86
UPF3AQ9H1J1 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC26.68■■□□□ 1.86
UPF3AQ9H1J1 AL136116.3-201ENST00000402907 1138 ntBASIC26.68■■□□□ 1.86
UPF3AQ9H1J1 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
UPF3AQ9H1J1 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC26.68■■□□□ 1.86
UPF3AQ9H1J1 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
UPF3AQ9H1J1 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
UPF3AQ9H1J1 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
UPF3AQ9H1J1 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
UPF3AQ9H1J1 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
UPF3AQ9H1J1 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
UPF3AQ9H1J1 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
UPF3AQ9H1J1 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
UPF3AQ9H1J1 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC26.67■■□□□ 1.86
UPF3AQ9H1J1 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
UPF3AQ9H1J1 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC26.67■■□□□ 1.86
UPF3AQ9H1J1 RALB-208ENST00000631312 311 ntTSL 5 BASIC26.67■■□□□ 1.86
UPF3AQ9H1J1 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC26.66■■□□□ 1.86
UPF3AQ9H1J1 MTDHP2-201ENST00000601468 714 ntBASIC26.66■■□□□ 1.86
UPF3AQ9H1J1 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
UPF3AQ9H1J1 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
UPF3AQ9H1J1 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC26.65■■□□□ 1.86
UPF3AQ9H1J1 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC26.65■■□□□ 1.86
UPF3AQ9H1J1 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
UPF3AQ9H1J1 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC26.65■■□□□ 1.86
UPF3AQ9H1J1 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC26.65■■□□□ 1.86
UPF3AQ9H1J1 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
UPF3AQ9H1J1 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC26.65■■□□□ 1.86
UPF3AQ9H1J1 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
UPF3AQ9H1J1 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
UPF3AQ9H1J1 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
UPF3AQ9H1J1 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC26.64■■□□□ 1.86
UPF3AQ9H1J1 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC26.64■■□□□ 1.86
UPF3AQ9H1J1 TK2-202ENST00000417693 1046 ntTSL 2 BASIC26.64■■□□□ 1.86
UPF3AQ9H1J1 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
UPF3AQ9H1J1 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
UPF3AQ9H1J1 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC26.63■■□□□ 1.85
UPF3AQ9H1J1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC26.63■■□□□ 1.85
UPF3AQ9H1J1 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC26.63■■□□□ 1.85
UPF3AQ9H1J1 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC26.63■■□□□ 1.85
UPF3AQ9H1J1 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
UPF3AQ9H1J1 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
UPF3AQ9H1J1 AC110285.6-201ENST00000617652 491 ntBASIC26.62■■□□□ 1.85
UPF3AQ9H1J1 EXOG-217ENST00000630638 197 ntTSL 5 BASIC26.62■■□□□ 1.85
UPF3AQ9H1J1 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC26.62■■□□□ 1.85
UPF3AQ9H1J1 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
UPF3AQ9H1J1 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC26.61■■□□□ 1.85
UPF3AQ9H1J1 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC26.61■■□□□ 1.85
UPF3AQ9H1J1 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
UPF3AQ9H1J1 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
UPF3AQ9H1J1 AL356740.2-201ENST00000601559 647 ntBASIC26.61■■□□□ 1.85
UPF3AQ9H1J1 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC26.61■■□□□ 1.85
UPF3AQ9H1J1 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC26.61■■□□□ 1.85
UPF3AQ9H1J1 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
UPF3AQ9H1J1 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC26.6■■□□□ 1.85
UPF3AQ9H1J1 MIR4466-201ENST00000606121 54 ntBASIC26.6■■□□□ 1.85
UPF3AQ9H1J1 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
UPF3AQ9H1J1 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC26.59■■□□□ 1.85
UPF3AQ9H1J1 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC26.59■■□□□ 1.85
UPF3AQ9H1J1 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC26.58■■□□□ 1.85
UPF3AQ9H1J1 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC26.58■■□□□ 1.85
UPF3AQ9H1J1 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC26.58■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms