Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
PTCHD1Q96NR3 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCHD1Q96NR3 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC22.37■■□□□ 1.17
PTCHD1Q96NR3 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCHD1Q96NR3 DUSP8P4-201ENST00000399538 1761 ntBASIC22.37■■□□□ 1.17
PTCHD1Q96NR3 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
PTCHD1Q96NR3 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.36■■□□□ 1.17
PTCHD1Q96NR3 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
PTCHD1Q96NR3 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PTCHD1Q96NR3 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PTCHD1Q96NR3 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
PTCHD1Q96NR3 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC22.36■■□□□ 1.17
PTCHD1Q96NR3 IDNK-201ENST00000376417 511 ntTSL 5 BASIC22.36■■□□□ 1.17
PTCHD1Q96NR3 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PTCHD1Q96NR3 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
PTCHD1Q96NR3 KRT8P33-201ENST00000508125 1423 ntBASIC22.36■■□□□ 1.17
PTCHD1Q96NR3 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD1Q96NR3 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD1Q96NR3 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD1Q96NR3 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC22.35■■□□□ 1.17
PTCHD1Q96NR3 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD1Q96NR3 AC019171.1-201ENST00000601251 1056 ntBASIC22.35■■□□□ 1.17
PTCHD1Q96NR3 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC22.35■■□□□ 1.17
PTCHD1Q96NR3 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PTCHD1Q96NR3 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC22.34■■□□□ 1.17
PTCHD1Q96NR3 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.34■■□□□ 1.17
PTCHD1Q96NR3 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC22.34■■□□□ 1.17
PTCHD1Q96NR3 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC22.34■■□□□ 1.17
PTCHD1Q96NR3 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
PTCHD1Q96NR3 AC097639.1-201ENST00000565519 1891 ntBASIC22.34■■□□□ 1.17
PTCHD1Q96NR3 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
PTCHD1Q96NR3 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
PTCHD1Q96NR3 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCHD1Q96NR3 RARRES2P1-201ENST00000474487 481 ntBASIC22.33■■□□□ 1.17
PTCHD1Q96NR3 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
PTCHD1Q96NR3 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.16
PTCHD1Q96NR3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.16
PTCHD1Q96NR3 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD1Q96NR3 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD1Q96NR3 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD1Q96NR3 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD1Q96NR3 YBX1P4-201ENST00000392794 808 ntBASIC22.32■■□□□ 1.16
PTCHD1Q96NR3 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD1Q96NR3 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
PTCHD1Q96NR3 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
PTCHD1Q96NR3 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD1Q96NR3 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD1Q96NR3 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD1Q96NR3 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
PTCHD1Q96NR3 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC22.31■■□□□ 1.16
PTCHD1Q96NR3 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC22.3■■□□□ 1.16
PTCHD1Q96NR3 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTCHD1Q96NR3 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
PTCHD1Q96NR3 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
PTCHD1Q96NR3 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD1Q96NR3 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD1Q96NR3 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD1Q96NR3 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC22.29■■□□□ 1.16
PTCHD1Q96NR3 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC22.29■■□□□ 1.16
PTCHD1Q96NR3 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD1Q96NR3 AC103834.1-201ENST00000520383 144 ntBASIC22.29■■□□□ 1.16
PTCHD1Q96NR3 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC22.29■■□□□ 1.16
PTCHD1Q96NR3 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD1Q96NR3 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
PTCHD1Q96NR3 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC22.29■■□□□ 1.16
PTCHD1Q96NR3 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
PTCHD1Q96NR3 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PTCHD1Q96NR3 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC22.28■■□□□ 1.16
PTCHD1Q96NR3 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PTCHD1Q96NR3 MIR4508-201ENST00000584178 70 ntBASIC22.28■■□□□ 1.16
PTCHD1Q96NR3 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC22.28■■□□□ 1.16
PTCHD1Q96NR3 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
PTCHD1Q96NR3 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTCHD1Q96NR3 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTCHD1Q96NR3 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
PTCHD1Q96NR3 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD1Q96NR3 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD1Q96NR3 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD1Q96NR3 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC22.27■■□□□ 1.16
PTCHD1Q96NR3 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
PTCHD1Q96NR3 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD1Q96NR3 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC22.27■■□□□ 1.16
PTCHD1Q96NR3 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
PTCHD1Q96NR3 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD1Q96NR3 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
PTCHD1Q96NR3 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC22.27■■□□□ 1.16
PTCHD1Q96NR3 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC22.27■■□□□ 1.15
PTCHD1Q96NR3 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PTCHD1Q96NR3 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.26■■□□□ 1.15
PTCHD1Q96NR3 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PTCHD1Q96NR3 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PTCHD1Q96NR3 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PTCHD1Q96NR3 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PTCHD1Q96NR3 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
PTCHD1Q96NR3 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD1Q96NR3 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD1Q96NR3 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD1Q96NR3 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
PTCHD1Q96NR3 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
PTCHD1Q96NR3 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 12.3 ms