Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 JTB-203ENST00000368589 1216 ntTSL 2 BASIC24.87■■□□□ 1.57
TTC28Q96AY4 CD72-202ENST00000378430 585 ntTSL 3 BASIC24.87■■□□□ 1.57
TTC28Q96AY4 DLX3-202ENST00000512495 834 ntTSL 2 BASIC24.87■■□□□ 1.57
TTC28Q96AY4 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
TTC28Q96AY4 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
TTC28Q96AY4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
TTC28Q96AY4 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC24.87■■□□□ 1.57
TTC28Q96AY4 AL137784.2-201ENST00000607332 1000 ntBASIC24.87■■□□□ 1.57
TTC28Q96AY4 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.86■■□□□ 1.57
TTC28Q96AY4 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
TTC28Q96AY4 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
TTC28Q96AY4 CA15P2-201ENST00000611168 834 ntBASIC24.86■■□□□ 1.57
TTC28Q96AY4 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
TTC28Q96AY4 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
TTC28Q96AY4 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
TTC28Q96AY4 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC24.85■■□□□ 1.57
TTC28Q96AY4 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC24.85■■□□□ 1.57
TTC28Q96AY4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
TTC28Q96AY4 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
TTC28Q96AY4 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
TTC28Q96AY4 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC24.84■■□□□ 1.57
TTC28Q96AY4 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
TTC28Q96AY4 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
TTC28Q96AY4 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC24.84■■□□□ 1.57
TTC28Q96AY4 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC24.84■■□□□ 1.57
TTC28Q96AY4 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC24.84■■□□□ 1.57
TTC28Q96AY4 EPHB2-207ENST00000544305 1709 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
TTC28Q96AY4 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
TTC28Q96AY4 IRS3P-201ENST00000223076 1006 ntBASIC24.83■■□□□ 1.57
TTC28Q96AY4 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
TTC28Q96AY4 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC24.83■■□□□ 1.56
TTC28Q96AY4 RHOF-204ENST00000537265 699 ntTSL 2 BASIC24.83■■□□□ 1.56
TTC28Q96AY4 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
TTC28Q96AY4 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
TTC28Q96AY4 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
TTC28Q96AY4 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC24.81■■□□□ 1.56
TTC28Q96AY4 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC24.81■■□□□ 1.56
TTC28Q96AY4 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC24.8■■□□□ 1.56
TTC28Q96AY4 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
TTC28Q96AY4 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC24.8■■□□□ 1.56
TTC28Q96AY4 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
TTC28Q96AY4 EMC9-206ENST00000560403 872 ntTSL 2 BASIC24.8■■□□□ 1.56
TTC28Q96AY4 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
TTC28Q96AY4 PTMA-205ENST00000410064 814 ntTSL 2 BASIC24.79■■□□□ 1.56
TTC28Q96AY4 HLA-L-209ENST00000420110 1011 ntBASIC24.79■■□□□ 1.56
TTC28Q96AY4 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC24.79■■□□□ 1.56
TTC28Q96AY4 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC24.79■■□□□ 1.56
TTC28Q96AY4 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC24.79■■□□□ 1.56
TTC28Q96AY4 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC24.79■■□□□ 1.56
TTC28Q96AY4 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
TTC28Q96AY4 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC24.78■■□□□ 1.56
TTC28Q96AY4 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
TTC28Q96AY4 SF1-220ENST00000626028 704 ntTSL 2 BASIC24.78■■□□□ 1.56
TTC28Q96AY4 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC24.78■■□□□ 1.56
TTC28Q96AY4 KRT18P10-201ENST00000388836 1287 ntBASIC24.77■■□□□ 1.56
TTC28Q96AY4 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
TTC28Q96AY4 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC24.76■■□□□ 1.55
TTC28Q96AY4 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC24.76■■□□□ 1.55
TTC28Q96AY4 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC24.76■■□□□ 1.55
TTC28Q96AY4 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
TTC28Q96AY4 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC24.75■■□□□ 1.55
TTC28Q96AY4 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC24.75■■□□□ 1.55
TTC28Q96AY4 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
TTC28Q96AY4 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC24.74■■□□□ 1.55
TTC28Q96AY4 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC24.74■■□□□ 1.55
TTC28Q96AY4 AP004833.2-201ENST00000532228 1454 ntBASIC24.74■■□□□ 1.55
TTC28Q96AY4 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
TTC28Q96AY4 SRD5A1P1-201ENST00000442297 786 ntBASIC24.74■■□□□ 1.55
TTC28Q96AY4 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
TTC28Q96AY4 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TTC28Q96AY4 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TTC28Q96AY4 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
TTC28Q96AY4 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC24.73■■□□□ 1.55
TTC28Q96AY4 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC24.73■■□□□ 1.55
TTC28Q96AY4 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC24.73■■□□□ 1.55
TTC28Q96AY4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC24.73■■□□□ 1.55
TTC28Q96AY4 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC24.73■■□□□ 1.55
TTC28Q96AY4 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
TTC28Q96AY4 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC24.72■■□□□ 1.55
TTC28Q96AY4 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC24.72■■□□□ 1.55
TTC28Q96AY4 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC24.72■■□□□ 1.55
TTC28Q96AY4 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
TTC28Q96AY4 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC24.72■■□□□ 1.55
TTC28Q96AY4 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC24.71■■□□□ 1.55
TTC28Q96AY4 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
TTC28Q96AY4 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC24.71■■□□□ 1.55
TTC28Q96AY4 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
TTC28Q96AY4 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC24.7■■□□□ 1.54
TTC28Q96AY4 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
TTC28Q96AY4 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.54
TTC28Q96AY4 KRT18P5-201ENST00000436075 1291 ntBASIC24.7■■□□□ 1.54
TTC28Q96AY4 AC011551.1-201ENST00000614101 683 ntBASIC24.7■■□□□ 1.54
TTC28Q96AY4 AL031602.1-201ENST00000633169 911 ntBASIC24.7■■□□□ 1.54
TTC28Q96AY4 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC24.69■■□□□ 1.54
TTC28Q96AY4 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC24.69■■□□□ 1.54
TTC28Q96AY4 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC24.69■■□□□ 1.54
TTC28Q96AY4 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
TTC28Q96AY4 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
TTC28Q96AY4 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC24.69■■□□□ 1.54
TTC28Q96AY4 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC24.69■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms