Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 PVT1_1.1-201ENST00000615125 194 ntBASIC28.34■■■□□ 2.13
NKX2-3Q8TAU0 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC28.33■■■□□ 2.13
NKX2-3Q8TAU0 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC28.33■■■□□ 2.13
NKX2-3Q8TAU0 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
NKX2-3Q8TAU0 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC28.32■■■□□ 2.12
NKX2-3Q8TAU0 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC28.32■■■□□ 2.12
NKX2-3Q8TAU0 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC28.32■■■□□ 2.12
NKX2-3Q8TAU0 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC28.32■■■□□ 2.12
NKX2-3Q8TAU0 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC28.32■■■□□ 2.12
NKX2-3Q8TAU0 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
NKX2-3Q8TAU0 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
NKX2-3Q8TAU0 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
NKX2-3Q8TAU0 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
NKX2-3Q8TAU0 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
NKX2-3Q8TAU0 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC28.3■■■□□ 2.12
NKX2-3Q8TAU0 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
NKX2-3Q8TAU0 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
NKX2-3Q8TAU0 AC145676.1-201ENST00000514988 2004 ntBASIC28.3■■■□□ 2.12
NKX2-3Q8TAU0 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC28.29■■■□□ 2.12
NKX2-3Q8TAU0 AC008406.3-201ENST00000620001 1374 ntBASIC28.29■■■□□ 2.12
NKX2-3Q8TAU0 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
NKX2-3Q8TAU0 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
NKX2-3Q8TAU0 IDNK-203ENST00000405990 629 ntTSL 2 BASIC28.29■■■□□ 2.12
NKX2-3Q8TAU0 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC28.29■■■□□ 2.12
NKX2-3Q8TAU0 AC018755.3-202ENST00000596210 929 ntBASIC28.29■■■□□ 2.12
NKX2-3Q8TAU0 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC28.29■■■□□ 2.12
NKX2-3Q8TAU0 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
NKX2-3Q8TAU0 PRTG-204ENST00000561292 833 ntTSL 3 BASIC28.28■■■□□ 2.12
NKX2-3Q8TAU0 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC28.28■■■□□ 2.12
NKX2-3Q8TAU0 LSM7-203ENST00000585409 512 ntTSL 2 BASIC28.28■■■□□ 2.12
NKX2-3Q8TAU0 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC28.28■■■□□ 2.12
NKX2-3Q8TAU0 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NKX2-3Q8TAU0 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
NKX2-3Q8TAU0 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
NKX2-3Q8TAU0 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC28.27■■■□□ 2.12
NKX2-3Q8TAU0 AL031848.2-201ENST00000607670 837 ntBASIC28.27■■■□□ 2.12
NKX2-3Q8TAU0 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NKX2-3Q8TAU0 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
NKX2-3Q8TAU0 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC28.26■■■□□ 2.11
NKX2-3Q8TAU0 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NKX2-3Q8TAU0 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC28.26■■■□□ 2.11
NKX2-3Q8TAU0 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NKX2-3Q8TAU0 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
NKX2-3Q8TAU0 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC28.25■■■□□ 2.11
NKX2-3Q8TAU0 RPS2P7-201ENST00000447334 885 ntBASIC28.25■■■□□ 2.11
NKX2-3Q8TAU0 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC28.25■■■□□ 2.11
NKX2-3Q8TAU0 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC28.25■■■□□ 2.11
NKX2-3Q8TAU0 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC28.25■■■□□ 2.11
NKX2-3Q8TAU0 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC28.25■■■□□ 2.11
NKX2-3Q8TAU0 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC28.25■■■□□ 2.11
NKX2-3Q8TAU0 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
NKX2-3Q8TAU0 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
NKX2-3Q8TAU0 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
NKX2-3Q8TAU0 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
NKX2-3Q8TAU0 AC087393.1-201ENST00000582896 145 ntBASIC28.24■■■□□ 2.11
NKX2-3Q8TAU0 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC28.24■■■□□ 2.11
NKX2-3Q8TAU0 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC28.24■■■□□ 2.11
NKX2-3Q8TAU0 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NKX2-3Q8TAU0 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC28.23■■■□□ 2.11
NKX2-3Q8TAU0 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
NKX2-3Q8TAU0 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
NKX2-3Q8TAU0 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
NKX2-3Q8TAU0 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
NKX2-3Q8TAU0 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
NKX2-3Q8TAU0 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC28.22■■■□□ 2.11
NKX2-3Q8TAU0 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC28.22■■■□□ 2.11
NKX2-3Q8TAU0 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NKX2-3Q8TAU0 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
NKX2-3Q8TAU0 SNAI3-AS1-204ENST00000567997 2048 ntBASIC28.21■■■□□ 2.11
NKX2-3Q8TAU0 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
NKX2-3Q8TAU0 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
NKX2-3Q8TAU0 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
NKX2-3Q8TAU0 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC28.21■■■□□ 2.11
NKX2-3Q8TAU0 SHF-207ENST00000560540 2062 ntTSL 5 BASIC28.21■■■□□ 2.11
NKX2-3Q8TAU0 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
NKX2-3Q8TAU0 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
NKX2-3Q8TAU0 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.11
NKX2-3Q8TAU0 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
NKX2-3Q8TAU0 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC28.2■■■□□ 2.1
NKX2-3Q8TAU0 IDNK-201ENST00000376417 511 ntTSL 5 BASIC28.2■■■□□ 2.1
NKX2-3Q8TAU0 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
NKX2-3Q8TAU0 AC103724.3-201ENST00000564481 992 ntBASIC28.2■■■□□ 2.1
NKX2-3Q8TAU0 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC28.19■■■□□ 2.1
NKX2-3Q8TAU0 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
NKX2-3Q8TAU0 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC28.19■■■□□ 2.1
NKX2-3Q8TAU0 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
NKX2-3Q8TAU0 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
NKX2-3Q8TAU0 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
NKX2-3Q8TAU0 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC28.19■■■□□ 2.1
NKX2-3Q8TAU0 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NKX2-3Q8TAU0 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NKX2-3Q8TAU0 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC28.17■■■□□ 2.1
NKX2-3Q8TAU0 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC28.17■■■□□ 2.1
NKX2-3Q8TAU0 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
NKX2-3Q8TAU0 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NKX2-3Q8TAU0 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NKX2-3Q8TAU0 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC28.16■■■□□ 2.1
NKX2-3Q8TAU0 MTX2-204ENST00000443241 799 ntTSL 3 BASIC28.16■■■□□ 2.1
NKX2-3Q8TAU0 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NKX2-3Q8TAU0 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC28.16■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms