Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC28.69■■■□□ 2.18
SMC1BQ8NDV3 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC28.69■■■□□ 2.18
SMC1BQ8NDV3 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC28.69■■■□□ 2.18
SMC1BQ8NDV3 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC28.69■■■□□ 2.18
SMC1BQ8NDV3 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC28.69■■■□□ 2.18
SMC1BQ8NDV3 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
SMC1BQ8NDV3 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC28.68■■■□□ 2.18
SMC1BQ8NDV3 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
SMC1BQ8NDV3 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SMC1BQ8NDV3 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC28.67■■■□□ 2.18
SMC1BQ8NDV3 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SMC1BQ8NDV3 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
SMC1BQ8NDV3 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC28.67■■■□□ 2.18
SMC1BQ8NDV3 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC28.67■■■□□ 2.18
SMC1BQ8NDV3 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
SMC1BQ8NDV3 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
SMC1BQ8NDV3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SMC1BQ8NDV3 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SMC1BQ8NDV3 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
SMC1BQ8NDV3 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC28.66■■■□□ 2.18
SMC1BQ8NDV3 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
SMC1BQ8NDV3 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
SMC1BQ8NDV3 ST7-205ENST00000393446 2114 ntTSL 5 BASIC28.65■■■□□ 2.18
SMC1BQ8NDV3 AC091305.1-201ENST00000479476 895 ntBASIC28.65■■■□□ 2.18
SMC1BQ8NDV3 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SMC1BQ8NDV3 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
SMC1BQ8NDV3 SRD5A1P1-201ENST00000442297 786 ntBASIC28.64■■■□□ 2.18
SMC1BQ8NDV3 AP001330.3-201ENST00000520123 633 ntBASIC28.64■■■□□ 2.18
SMC1BQ8NDV3 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
SMC1BQ8NDV3 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
SMC1BQ8NDV3 GAK-223ENST00000628912 497 ntTSL 5 BASIC28.63■■■□□ 2.17
SMC1BQ8NDV3 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC28.63■■■□□ 2.17
SMC1BQ8NDV3 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC28.62■■■□□ 2.17
SMC1BQ8NDV3 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC28.62■■■□□ 2.17
SMC1BQ8NDV3 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SMC1BQ8NDV3 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
SMC1BQ8NDV3 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC28.62■■■□□ 2.17
SMC1BQ8NDV3 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC28.61■■■□□ 2.17
SMC1BQ8NDV3 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC28.61■■■□□ 2.17
SMC1BQ8NDV3 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
SMC1BQ8NDV3 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC28.61■■■□□ 2.17
SMC1BQ8NDV3 AC011551.1-201ENST00000614101 683 ntBASIC28.61■■■□□ 2.17
SMC1BQ8NDV3 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC28.61■■■□□ 2.17
SMC1BQ8NDV3 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC28.61■■■□□ 2.17
SMC1BQ8NDV3 ABHD12-202ENST00000376542 1725 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
SMC1BQ8NDV3 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SMC1BQ8NDV3 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
SMC1BQ8NDV3 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC28.6■■■□□ 2.17
SMC1BQ8NDV3 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC28.6■■■□□ 2.17
SMC1BQ8NDV3 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC28.6■■■□□ 2.17
SMC1BQ8NDV3 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
SMC1BQ8NDV3 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC28.59■■■□□ 2.17
SMC1BQ8NDV3 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC28.59■■■□□ 2.17
SMC1BQ8NDV3 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC28.58■■■□□ 2.17
SMC1BQ8NDV3 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
SMC1BQ8NDV3 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC28.58■■■□□ 2.17
SMC1BQ8NDV3 ST7-202ENST00000323984 2142 ntTSL 5 BASIC28.58■■■□□ 2.17
SMC1BQ8NDV3 ST7-207ENST00000393449 2127 ntTSL 5 BASIC28.58■■■□□ 2.17
SMC1BQ8NDV3 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
SMC1BQ8NDV3 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC28.57■■■□□ 2.16
SMC1BQ8NDV3 IKBKGP1-201ENST00000612193 1073 ntBASIC28.57■■■□□ 2.16
SMC1BQ8NDV3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC28.56■■■□□ 2.16
SMC1BQ8NDV3 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
SMC1BQ8NDV3 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
SMC1BQ8NDV3 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SMC1BQ8NDV3 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SMC1BQ8NDV3 AL137784.2-201ENST00000607332 1000 ntBASIC28.55■■■□□ 2.16
SMC1BQ8NDV3 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SMC1BQ8NDV3 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SMC1BQ8NDV3 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC28.55■■■□□ 2.16
SMC1BQ8NDV3 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SMC1BQ8NDV3 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SMC1BQ8NDV3 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SMC1BQ8NDV3 ID1-201ENST00000376105 1233 ntBASIC28.54■■■□□ 2.16
SMC1BQ8NDV3 AC004448.1-201ENST00000458332 883 ntBASIC28.54■■■□□ 2.16
SMC1BQ8NDV3 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC28.54■■■□□ 2.16
SMC1BQ8NDV3 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
SMC1BQ8NDV3 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC28.54■■■□□ 2.16
SMC1BQ8NDV3 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.54■■■□□ 2.16
SMC1BQ8NDV3 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SMC1BQ8NDV3 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SMC1BQ8NDV3 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SMC1BQ8NDV3 DENND3-207ENST00000518347 850 ntTSL 2 BASIC28.53■■■□□ 2.16
SMC1BQ8NDV3 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
SMC1BQ8NDV3 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC28.52■■■□□ 2.16
SMC1BQ8NDV3 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SMC1BQ8NDV3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC28.52■■■□□ 2.16
SMC1BQ8NDV3 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SMC1BQ8NDV3 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.15
SMC1BQ8NDV3 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC28.51■■■□□ 2.15
SMC1BQ8NDV3 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC28.51■■■□□ 2.15
SMC1BQ8NDV3 AC022517.1-201ENST00000592429 346 ntBASIC28.51■■■□□ 2.15
SMC1BQ8NDV3 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
SMC1BQ8NDV3 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC28.51■■■□□ 2.15
SMC1BQ8NDV3 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SMC1BQ8NDV3 CA15P2-201ENST00000611168 834 ntBASIC28.5■■■□□ 2.15
SMC1BQ8NDV3 TMEM150A-201ENST00000306353 1484 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
SMC1BQ8NDV3 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC28.5■■■□□ 2.15
SMC1BQ8NDV3 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC28.49■■■□□ 2.15
SMC1BQ8NDV3 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms