Protein–RNA interactions for Protein: Q8N3V7

SYNPO, Synaptopodin, humanhuman

Predictions only

Length 929 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPOQ8N3V7 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
SYNPOQ8N3V7 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
SYNPOQ8N3V7 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC24.3■■□□□ 1.48
SYNPOQ8N3V7 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
SYNPOQ8N3V7 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC24.29■■□□□ 1.48
SYNPOQ8N3V7 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC24.29■■□□□ 1.48
SYNPOQ8N3V7 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC24.29■■□□□ 1.48
SYNPOQ8N3V7 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC24.29■■□□□ 1.48
SYNPOQ8N3V7 SRR-208ENST00000576848 588 ntTSL 4 BASIC24.29■■□□□ 1.48
SYNPOQ8N3V7 AC142472.1-201ENST00000612013 1741 ntBASIC24.29■■□□□ 1.48
SYNPOQ8N3V7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC24.29■■□□□ 1.48
SYNPOQ8N3V7 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
SYNPOQ8N3V7 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC24.29■■□□□ 1.48
SYNPOQ8N3V7 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC24.28■■□□□ 1.48
SYNPOQ8N3V7 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SYNPOQ8N3V7 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
SYNPOQ8N3V7 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
SYNPOQ8N3V7 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SYNPOQ8N3V7 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.28■■□□□ 1.48
SYNPOQ8N3V7 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SYNPOQ8N3V7 AC131281.2-201ENST00000520478 145 ntBASIC24.28■■□□□ 1.48
SYNPOQ8N3V7 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
SYNPOQ8N3V7 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SYNPOQ8N3V7 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SYNPOQ8N3V7 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
SYNPOQ8N3V7 NALT1-201ENST00000429224 738 ntTSL 5 BASIC24.27■■□□□ 1.48
SYNPOQ8N3V7 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC24.27■■□□□ 1.48
SYNPOQ8N3V7 TRIR-202ENST00000588213 841 ntTSL 3 BASIC24.27■■□□□ 1.48
SYNPOQ8N3V7 AC011551.1-201ENST00000614101 683 ntBASIC24.27■■□□□ 1.48
SYNPOQ8N3V7 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SYNPOQ8N3V7 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
SYNPOQ8N3V7 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC24.26■■□□□ 1.47
SYNPOQ8N3V7 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC24.26■■□□□ 1.47
SYNPOQ8N3V7 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.26■■□□□ 1.47
SYNPOQ8N3V7 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC24.26■■□□□ 1.47
SYNPOQ8N3V7 AC010997.5-201ENST00000609182 354 ntBASIC24.26■■□□□ 1.47
SYNPOQ8N3V7 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
SYNPOQ8N3V7 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC24.25■■□□□ 1.47
SYNPOQ8N3V7 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC24.25■■□□□ 1.47
SYNPOQ8N3V7 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC24.25■■□□□ 1.47
SYNPOQ8N3V7 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
SYNPOQ8N3V7 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
SYNPOQ8N3V7 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC24.24■■□□□ 1.47
SYNPOQ8N3V7 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC24.24■■□□□ 1.47
SYNPOQ8N3V7 MIR3621-201ENST00000580529 85 ntBASIC24.24■■□□□ 1.47
SYNPOQ8N3V7 MIR6724-1-201ENST00000616420 92 ntBASIC24.24■■□□□ 1.47
SYNPOQ8N3V7 MIR6724-2-201ENST00000616483 92 ntBASIC24.24■■□□□ 1.47
SYNPOQ8N3V7 MIR6724-4-201ENST00000617390 92 ntBASIC24.24■■□□□ 1.47
SYNPOQ8N3V7 MIR6724-3-201ENST00000622482 92 ntBASIC24.24■■□□□ 1.47
SYNPOQ8N3V7 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
SYNPOQ8N3V7 AL136116.3-201ENST00000402907 1138 ntBASIC24.23■■□□□ 1.47
SYNPOQ8N3V7 AL117332.1-201ENST00000622628 974 ntBASIC24.23■■□□□ 1.47
SYNPOQ8N3V7 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.23■■□□□ 1.47
SYNPOQ8N3V7 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SYNPOQ8N3V7 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
SYNPOQ8N3V7 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC24.22■■□□□ 1.47
SYNPOQ8N3V7 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC24.22■■□□□ 1.47
SYNPOQ8N3V7 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC24.22■■□□□ 1.47
SYNPOQ8N3V7 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC24.22■■□□□ 1.47
SYNPOQ8N3V7 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SYNPOQ8N3V7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SYNPOQ8N3V7 MTDHP2-201ENST00000601468 714 ntBASIC24.21■■□□□ 1.47
SYNPOQ8N3V7 AL356740.2-201ENST00000601559 647 ntBASIC24.21■■□□□ 1.47
SYNPOQ8N3V7 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
SYNPOQ8N3V7 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC24.21■■□□□ 1.47
SYNPOQ8N3V7 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC24.21■■□□□ 1.47
SYNPOQ8N3V7 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.47
SYNPOQ8N3V7 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
SYNPOQ8N3V7 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC24.2■■□□□ 1.46
SYNPOQ8N3V7 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SYNPOQ8N3V7 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC24.2■■□□□ 1.46
SYNPOQ8N3V7 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC24.2■■□□□ 1.46
SYNPOQ8N3V7 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC24.2■■□□□ 1.46
SYNPOQ8N3V7 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC24.19■■□□□ 1.46
SYNPOQ8N3V7 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
SYNPOQ8N3V7 AL121749.1-202ENST00000609313 2153 ntBASIC24.19■■□□□ 1.46
SYNPOQ8N3V7 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
SYNPOQ8N3V7 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC24.19■■□□□ 1.46
SYNPOQ8N3V7 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
SYNPOQ8N3V7 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
SYNPOQ8N3V7 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC24.18■■□□□ 1.46
SYNPOQ8N3V7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC24.18■■□□□ 1.46
SYNPOQ8N3V7 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC24.18■■□□□ 1.46
SYNPOQ8N3V7 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
SYNPOQ8N3V7 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC24.18■■□□□ 1.46
SYNPOQ8N3V7 GAK-223ENST00000628912 497 ntTSL 5 BASIC24.18■■□□□ 1.46
SYNPOQ8N3V7 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
SYNPOQ8N3V7 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC24.17■■□□□ 1.46
SYNPOQ8N3V7 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC24.17■■□□□ 1.46
SYNPOQ8N3V7 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC24.17■■□□□ 1.46
SYNPOQ8N3V7 EXOG-217ENST00000630638 197 ntTSL 5 BASIC24.17■■□□□ 1.46
SYNPOQ8N3V7 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC24.17■■□□□ 1.46
SYNPOQ8N3V7 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
SYNPOQ8N3V7 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SYNPOQ8N3V7 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
SYNPOQ8N3V7 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
SYNPOQ8N3V7 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
SYNPOQ8N3V7 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
SYNPOQ8N3V7 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SYNPOQ8N3V7 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC24.16■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms