Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SH3RF1Q7Z6J0 ERN1-208ENST00000606895 2068 ntBASIC27.36■■□□□ 1.97
SH3RF1Q7Z6J0 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SH3RF1Q7Z6J0 RNF146-205ENST00000477776 762 ntTSL 3 BASIC27.36■■□□□ 1.97
SH3RF1Q7Z6J0 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SH3RF1Q7Z6J0 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SH3RF1Q7Z6J0 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC27.35■■□□□ 1.97
SH3RF1Q7Z6J0 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
SH3RF1Q7Z6J0 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SH3RF1Q7Z6J0 LSM7-203ENST00000585409 512 ntTSL 2 BASIC27.35■■□□□ 1.97
SH3RF1Q7Z6J0 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC27.35■■□□□ 1.97
SH3RF1Q7Z6J0 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SH3RF1Q7Z6J0 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC27.34■■□□□ 1.97
SH3RF1Q7Z6J0 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC27.34■■□□□ 1.97
SH3RF1Q7Z6J0 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SH3RF1Q7Z6J0 MTX2-204ENST00000443241 799 ntTSL 3 BASIC27.34■■□□□ 1.97
SH3RF1Q7Z6J0 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC27.34■■□□□ 1.97
SH3RF1Q7Z6J0 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SH3RF1Q7Z6J0 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SH3RF1Q7Z6J0 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SH3RF1Q7Z6J0 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SH3RF1Q7Z6J0 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SH3RF1Q7Z6J0 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SH3RF1Q7Z6J0 AL359504.2-201ENST00000605506 1601 ntBASIC27.33■■□□□ 1.97
SH3RF1Q7Z6J0 PKDCC-201ENST00000294964 2502 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
SH3RF1Q7Z6J0 AC010501.1-201ENST00000606270 1962 ntBASIC27.33■■□□□ 1.97
SH3RF1Q7Z6J0 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SH3RF1Q7Z6J0 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SH3RF1Q7Z6J0 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SH3RF1Q7Z6J0 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC27.31■■□□□ 1.96
SH3RF1Q7Z6J0 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC27.31■■□□□ 1.96
SH3RF1Q7Z6J0 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC27.31■■□□□ 1.96
SH3RF1Q7Z6J0 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SH3RF1Q7Z6J0 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC27.31■■□□□ 1.96
SH3RF1Q7Z6J0 AC008406.3-201ENST00000620001 1374 ntBASIC27.31■■□□□ 1.96
SH3RF1Q7Z6J0 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
SH3RF1Q7Z6J0 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC27.3■■□□□ 1.96
SH3RF1Q7Z6J0 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC27.3■■□□□ 1.96
SH3RF1Q7Z6J0 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC27.3■■□□□ 1.96
SH3RF1Q7Z6J0 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
SH3RF1Q7Z6J0 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
SH3RF1Q7Z6J0 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
SH3RF1Q7Z6J0 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC27.29■■□□□ 1.96
SH3RF1Q7Z6J0 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
SH3RF1Q7Z6J0 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SH3RF1Q7Z6J0 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SH3RF1Q7Z6J0 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SH3RF1Q7Z6J0 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC27.28■■□□□ 1.96
SH3RF1Q7Z6J0 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SH3RF1Q7Z6J0 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SH3RF1Q7Z6J0 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC27.27■■□□□ 1.96
SH3RF1Q7Z6J0 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC27.27■■□□□ 1.96
SH3RF1Q7Z6J0 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC27.27■■□□□ 1.96
SH3RF1Q7Z6J0 CREM-229ENST00000474362 1030 ntTSL 2 BASIC27.27■■□□□ 1.96
SH3RF1Q7Z6J0 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SH3RF1Q7Z6J0 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
SH3RF1Q7Z6J0 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC27.26■■□□□ 1.96
SH3RF1Q7Z6J0 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
SH3RF1Q7Z6J0 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.96
SH3RF1Q7Z6J0 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SH3RF1Q7Z6J0 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SH3RF1Q7Z6J0 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC27.26■■□□□ 1.95
SH3RF1Q7Z6J0 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC27.26■■□□□ 1.95
SH3RF1Q7Z6J0 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SH3RF1Q7Z6J0 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
SH3RF1Q7Z6J0 GRAMD4P7-201ENST00000578182 1232 ntBASIC27.25■■□□□ 1.95
SH3RF1Q7Z6J0 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC27.25■■□□□ 1.95
SH3RF1Q7Z6J0 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC27.24■■□□□ 1.95
SH3RF1Q7Z6J0 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC27.24■■□□□ 1.95
SH3RF1Q7Z6J0 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC27.24■■□□□ 1.95
SH3RF1Q7Z6J0 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
SH3RF1Q7Z6J0 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SH3RF1Q7Z6J0 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
SH3RF1Q7Z6J0 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC27.23■■□□□ 1.95
SH3RF1Q7Z6J0 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SH3RF1Q7Z6J0 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC27.22■■□□□ 1.95
SH3RF1Q7Z6J0 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC27.22■■□□□ 1.95
SH3RF1Q7Z6J0 AC019171.1-201ENST00000601251 1056 ntBASIC27.22■■□□□ 1.95
SH3RF1Q7Z6J0 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SH3RF1Q7Z6J0 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC27.21■■□□□ 1.95
SH3RF1Q7Z6J0 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
SH3RF1Q7Z6J0 TK2-216ENST00000564917 1156 ntTSL 3 BASIC27.21■■□□□ 1.95
SH3RF1Q7Z6J0 Z92544.1-202ENST00000571933 1220 ntBASIC27.21■■□□□ 1.95
SH3RF1Q7Z6J0 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC27.21■■□□□ 1.95
SH3RF1Q7Z6J0 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC27.21■■□□□ 1.95
SH3RF1Q7Z6J0 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC27.21■■□□□ 1.95
SH3RF1Q7Z6J0 PEMT-206ENST00000435340 960 ntTSL 5 BASIC27.2■■□□□ 1.94
SH3RF1Q7Z6J0 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC27.2■■□□□ 1.94
SH3RF1Q7Z6J0 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC27.2■■□□□ 1.94
SH3RF1Q7Z6J0 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
SH3RF1Q7Z6J0 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.94
SH3RF1Q7Z6J0 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC27.2■■□□□ 1.94
SH3RF1Q7Z6J0 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC27.2■■□□□ 1.94
SH3RF1Q7Z6J0 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SH3RF1Q7Z6J0 AC135731.1-201ENST00000569415 2548 ntBASIC27.19■■□□□ 1.94
SH3RF1Q7Z6J0 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC27.19■■□□□ 1.94
SH3RF1Q7Z6J0 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC27.19■■□□□ 1.94
SH3RF1Q7Z6J0 NECAB2-201ENST00000305202 1608 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SH3RF1Q7Z6J0 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
SH3RF1Q7Z6J0 AC096887.2-201ENST00000623443 1957 ntBASIC27.18■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms