Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PHF2P2-202ENST00000444553 2865 ntBASIC8.18□□□□□ -1.12e-8■■■■□ 23.1
YBX3P16989 CD52-203ENST00000492808 581 ntTSL 1 (best)10.99□□□□□ -0.654e-6■■■■□ 23.1
YBX3P16989 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC8.7□□□□□ -1.024e-6■■■■□ 23.1
YBX3P16989 CD52-202ENST00000470468 381 ntTSL 34.67□□□□□ -1.664e-6■■■■□ 23.1
YBX3P16989 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.96□□□□□ -1.463e-6■■■■□ 23.1
YBX3P16989 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.593e-6■■■■□ 23.1
YBX3P16989 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.07□□□□□ -1.63e-6■■■■□ 23.1
YBX3P16989 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.94□□□□□ -1.623e-6■■■■□ 23.1
YBX3P16989 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.653e-6■■■■□ 23.1
YBX3P16989 SACS-203ENST00000423156 1709 ntTSL 220.81■□□□□ 0.926e-7■■■■□ 23.1
YBX3P16989 SACS-204ENST00000455470 2784 ntTSL 1 (best)11.66□□□□□ -0.546e-7■■■■□ 23.1
YBX3P16989 SACS-202ENST00000402364 15134 ntTSL 2 BASIC10.67□□□□□ -0.76e-7■■■■□ 23.1
YBX3P16989 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.45□□□□□ -2.026e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-217ENST00000568597 592 ntTSL 226.42■■□□□ 1.824e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC22.56■■□□□ 1.24e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC21.64■■□□□ 1.054e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-219ENST00000568963 480 ntTSL 421.64■■□□□ 1.054e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-203ENST00000563000 622 ntTSL 419.85■□□□□ 0.774e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-220ENST00000569076 557 ntTSL 418.78■□□□□ 0.64e-7■■■■□ 23.1
YBX3P16989 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.554e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-215ENST00000567523 1839 ntTSL 217.51■□□□□ 0.394e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-213ENST00000566801 338 ntTSL 417.12■□□□□ 0.334e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-211ENST00000566184 493 ntTSL 417.01■□□□□ 0.314e-7■■■■□ 23.1
YBX3P16989 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.154e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-216ENST00000567740 1051 ntTSL 215.76■□□□□ 0.114e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-208ENST00000565323 688 ntTSL 2 BASIC15.01□□□□□ -0.014e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-204ENST00000563160 581 ntTSL 410.28□□□□□ -0.764e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC10.22□□□□□ -0.774e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-210ENST00000565727 599 ntTSL 29.72□□□□□ -0.854e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-206ENST00000564765 706 ntTSL 4 BASIC6.93□□□□□ -1.34e-7■■■■□ 23.1
YBX3P16989 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.59□□□□□ -1.354e-7■■■■□ 23.1
YBX3P16989 SCAF4-204ENST00000467731 2976 ntTSL 1 (best)8.34□□□□□ -1.072e-7■■■■□ 23.1
YBX3P16989 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.94■■□□□ 1.14e-6■■■■□ 23.1
YBX3P16989 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.864e-6■■■■□ 23.1
YBX3P16989 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.464e-6■■■■□ 23.1
YBX3P16989 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.154e-6■■■■□ 23.1
YBX3P16989 TOMM40L-203ENST00000465512 669 ntTSL 218.91■□□□□ 0.626e-8■■■■□ 23.1
YBX3P16989 TOMM40L-208ENST00000492482 1120 ntTSL 317.84■□□□□ 0.456e-8■■■■□ 23.1
YBX3P16989 TOMM40L-205ENST00000470426 845 ntTSL 516.06■□□□□ 0.166e-8■■■■□ 23.1
YBX3P16989 TOMM40L-206ENST00000474486 2396 ntTSL 215.16■□□□□ 0.026e-8■■■■□ 23.1
YBX3P16989 TOMM40L-202ENST00000367988 2708 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.056e-8■■■■□ 23.1
YBX3P16989 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.066e-8■■■■□ 23.1
YBX3P16989 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC13.83□□□□□ -0.196e-8■■■■□ 23.1
YBX3P16989 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.434e-6■■■■□ 23.1
YBX3P16989 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC14.76□□□□□ -0.058e-14■■■■□ 23.1
YBX3P16989 TRMT10C-202ENST00000495642 1017 ntTSL 314.7□□□□□ -0.064e-6■■■■□ 23.1
YBX3P16989 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC14.6□□□□□ -0.078e-14■■■■□ 23.1
YBX3P16989 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.178e-14■■■■□ 23.1
YBX3P16989 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC7.94□□□□□ -1.148e-14■■■■□ 23.1
YBX3P16989 Y_RNA.132-201ENST00000363421 102 ntBASIC6.71□□□□□ -1.348e-14■■■■□ 23.1
YBX3P16989 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.54□□□□□ -1.368e-14■■■■□ 23.1
YBX3P16989 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC6.16□□□□□ -1.428e-14■■■■□ 23.1
YBX3P16989 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.58e-14■■■■□ 23.1
YBX3P16989 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC4.16□□□□□ -1.748e-14■■■■□ 23.1
YBX3P16989 NUSAP1-204ENST00000557840 416 ntTSL 315.64■□□□□ 0.092e-7■■■■□ 23.1
YBX3P16989 FAF1-203ENST00000472808 759 ntTSL 36.35□□□□□ -1.393e-7■■■■□ 23.1
YBX3P16989 PSMB10-205ENST00000575556 966 ntTSL 226.05■■□□□ 1.767e-8■■■■□ 23.1
YBX3P16989 PSMB10-202ENST00000570304 851 ntTSL 224■■□□□ 1.437e-8■■■■□ 23.1
YBX3P16989 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.637e-8■■■■□ 23.1
YBX3P16989 METTL26-206ENST00000448973 1710 ntTSL 1 (best)28.66■■■□□ 2.184e-9■■■■□ 23.1
YBX3P16989 METTL26-203ENST00000397664 604 ntTSL 2 BASIC28.01■■■□□ 2.074e-9■■■■□ 23.1
YBX3P16989 METTL26-211ENST00000568077 588 ntTSL 325.11■■□□□ 1.614e-9■■■■□ 23.1
YBX3P16989 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.164e-9■■■■□ 23.1
YBX3P16989 METTL26-205ENST00000397666 726 ntTSL 2 BASIC22.27■■□□□ 1.164e-9■■■■□ 23.1
YBX3P16989 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC21.8■■□□□ 1.084e-9■■■■□ 23.1
YBX3P16989 METTL26-207ENST00000456420 755 ntTSL 321.76■■□□□ 1.074e-9■■■■□ 23.1
YBX3P16989 METTL26-214ENST00000614890 801 ntTSL 3 BASIC19.75■□□□□ 0.754e-9■■■■□ 23.1
YBX3P16989 OAZ2-202ENST00000558194 7102 ntTSL 29.1□□□□□ -0.952e-9■■■■□ 23
YBX3P16989 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.593e-7■■■■□ 23
YBX3P16989 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.383e-7■■■■□ 23
YBX3P16989 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.97■□□□□ 0.313e-7■■■■□ 23
YBX3P16989 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.2■□□□□ 0.183e-7■■■■□ 23
YBX3P16989 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC15.01□□□□□ -0.013e-7■■■■□ 23
YBX3P16989 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC14.68□□□□□ -0.063e-7■■■■□ 23
YBX3P16989 KIFC3-216ENST00000564136 3071 ntTSL 214.3□□□□□ -0.123e-7■■■■□ 23
YBX3P16989 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC14.21□□□□□ -0.133e-7■■■■□ 23
YBX3P16989 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC13.55□□□□□ -0.243e-7■■■■□ 23
YBX3P16989 SNX5-203ENST00000419004 778 ntTSL 522.38■■□□□ 1.179e-7■■■■□ 23
YBX3P16989 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.35■□□□□ 0.857e-7■■■■□ 23
YBX3P16989 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.96■□□□□ 0.637e-7■■■■□ 23
YBX3P16989 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.84■□□□□ 0.457e-7■■■■□ 23
YBX3P16989 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.78■□□□□ 0.287e-7■■■■□ 23
YBX3P16989 MAP4K4-220ENST00000627726 3135 ntTSL 5 BASIC10.26□□□□□ -0.777e-7■■■■□ 23
YBX3P16989 MAP4K4-201ENST00000302217 6624 ntTSL 1 (best) BASIC8.65□□□□□ -1.027e-7■■■■□ 23
YBX3P16989 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC8.65□□□□□ -1.027e-7■■■■□ 23
YBX3P16989 MAP4K4-212ENST00000456652 3855 ntTSL 5 BASIC8.36□□□□□ -1.077e-7■■■■□ 23
YBX3P16989 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC8.15□□□□□ -1.17e-7■■■■□ 23
YBX3P16989 MAP4K4-203ENST00000347699 3792 ntTSL 1 (best) BASIC7.95□□□□□ -1.147e-7■■■■□ 23
YBX3P16989 MAP4K4-221ENST00000634702 3800 ntTSL 1 (best) BASIC7.08□□□□□ -1.287e-7■■■■□ 23
YBX3P16989 MAP4K4-207ENST00000417294 4251 ntTSL 56.36□□□□□ -1.397e-7■■■■□ 23
YBX3P16989 Y_RNA.490-201ENST00000384413 102 ntBASIC6.44□□□□□ -1.389e-17■■■■□ 23
YBX3P16989 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.237e-8■■■■□ 23
YBX3P16989 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.047e-8■■■■□ 23
YBX3P16989 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.87e-8■■■■□ 23
YBX3P16989 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.697e-8■■■■□ 23
YBX3P16989 ZDHHC4-208ENST00000474738 718 ntTSL 219.21■□□□□ 0.677e-8■■■■□ 23
YBX3P16989 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.677e-8■■■■□ 23
YBX3P16989 ZDHHC4-202ENST00000396706 1942 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.057e-8■■■■□ 23
YBX3P16989 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC29.75■■■□□ 2.357e-8■■■■□ 23
YBX3P16989 CAPNS1-214ENST00000592483 431 ntTSL 532.69■■■□□ 2.822e-23■■■■□ 22.9
Retrieved 100 of 29,075 protein–RNA pairs in 516.9 ms