Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC18.36■□□□□ 0.53
CXCL1P09341 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC18.36■□□□□ 0.53
CXCL1P09341 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
CXCL1P09341 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL1P09341 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL1P09341 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL1P09341 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL1P09341 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL1P09341 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
CXCL1P09341 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
CXCL1P09341 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.35■□□□□ 0.53
CXCL1P09341 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
CXCL1P09341 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CXCL1P09341 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CXCL1P09341 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
CXCL1P09341 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CXCL1P09341 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CXCL1P09341 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
CXCL1P09341 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
CXCL1P09341 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC18.33■□□□□ 0.53
CXCL1P09341 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CXCL1P09341 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
CXCL1P09341 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
CXCL1P09341 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC18.33■□□□□ 0.52
CXCL1P09341 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC18.33■□□□□ 0.52
CXCL1P09341 WHAMMP2-203ENST00000563942 1603 ntBASIC18.33■□□□□ 0.52
CXCL1P09341 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CXCL1P09341 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CXCL1P09341 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
CXCL1P09341 EI24-212ENST00000615917 1407 ntTSL 2 BASIC18.32■□□□□ 0.52
CXCL1P09341 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.32■□□□□ 0.52
CXCL1P09341 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CXCL1P09341 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CXCL1P09341 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CXCL1P09341 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CXCL1P09341 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CXCL1P09341 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
CXCL1P09341 LINC00273-201ENST00000539813 1452 ntBASIC18.32■□□□□ 0.52
CXCL1P09341 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC18.32■□□□□ 0.52
CXCL1P09341 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CXCL1P09341 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CXCL1P09341 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CXCL1P09341 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CXCL1P09341 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CXCL1P09341 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CXCL1P09341 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.31■□□□□ 0.52
CXCL1P09341 MIR762-201ENST00000390236 83 ntBASIC18.31■□□□□ 0.52
CXCL1P09341 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CXCL1P09341 CHML-205ENST00000638160 705 ntTSL 3 BASIC18.31■□□□□ 0.52
CXCL1P09341 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
CXCL1P09341 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CXCL1P09341 ABCB10P4-201ENST00000566803 2184 ntBASIC18.31■□□□□ 0.52
CXCL1P09341 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CXCL1P09341 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CXCL1P09341 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
CXCL1P09341 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC18.31■□□□□ 0.52
CXCL1P09341 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC18.3■□□□□ 0.52
CXCL1P09341 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CXCL1P09341 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CXCL1P09341 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CXCL1P09341 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC18.3■□□□□ 0.52
CXCL1P09341 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.3■□□□□ 0.52
CXCL1P09341 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CXCL1P09341 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.3■□□□□ 0.52
CXCL1P09341 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CXCL1P09341 AC136428.2-201ENST00000563187 214 ntBASIC18.3■□□□□ 0.52
CXCL1P09341 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CXCL1P09341 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CXCL1P09341 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.3■□□□□ 0.52
CXCL1P09341 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CXCL1P09341 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CXCL1P09341 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CXCL1P09341 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CXCL1P09341 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CXCL1P09341 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CXCL1P09341 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CXCL1P09341 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC18.29■□□□□ 0.52
CXCL1P09341 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CXCL1P09341 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.29■□□□□ 0.52
CXCL1P09341 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CXCL1P09341 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CXCL1P09341 AP003733.4-201ENST00000623785 1697 ntBASIC18.28■□□□□ 0.52
CXCL1P09341 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL1P09341 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL1P09341 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.28■□□□□ 0.52
CXCL1P09341 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL1P09341 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL1P09341 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL1P09341 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL1P09341 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CXCL1P09341 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
CXCL1P09341 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
CXCL1P09341 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL1P09341 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CXCL1P09341 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CXCL1P09341 AC108673.1-201ENST00000510422 1159 ntBASIC18.27■□□□□ 0.52
CXCL1P09341 AC233723.2-201ENST00000623798 2106 ntBASIC18.27■□□□□ 0.52
CXCL1P09341 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CXCL1P09341 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.27■□□□□ 0.52
CXCL1P09341 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms